8 fewer sets in 4DN-only Data.
Included Properties
Data Type
Dataset
Modifications
Set Type
18 Common Properties
Project
External
Lab
Giacomo Cavalli, UM
Experiment Category
Sequencing
Experiment Type
Hi-C
Organism
Mouse
Sample Type
stem cells
Sample Tier
Unclassified
Sample Category
Mouse stem cell
Sample
ES-E14TG2a
Organ/System
No value
Tissue Source
stem cell
Publication
Bonev B et al. (2017) PMID:29053968
Treatments
No value
Assay Details
Enzyme: DpnII
Center
External
Status
Released
Commendations
No value
Warnings
Biosample Metadata Incomplete
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
in situ Hi-C
ES-E14TG2a
Hi-C on E14Tg2 cell line
strong zfp608 activation with dCas9-VP64-p65-Hsf1
Enzyme
DpnII
in situ Hi-C
ES-E14TG2a
Hi-C on E14Tg2 cell line
strong sox4 activation with dCas9-VP64-p65-Hsf1
Enzyme
DpnII
in situ Hi-C
ES-E14TG2a
Hi-C on E14Tg2 cell line
zfp608 activation with dCas9-VP64
Enzyme
DpnII
in situ Hi-C
ES-E14TG2a
Hi-C on E14Tg2 cell line
sox4 activation with dCas9-VP64
Enzyme
DpnII
in situ Hi-C
ES-E14TG2a
Hi-C on E14Tg2 cell line
control - zfp608 gRNA with empty dCas9
Enzyme
DpnII
in situ Hi-C
ES-E14TG2a
Hi-C on E14Tg2 cell line
control - sox4 gRNA with empty dCas9
Enzyme
DpnII
in situ Hi-C
ES-E14TG2a
Hi-C on E14Tg2 cell line
control - zfp608 gRNA without dCas9
Enzyme
DpnII
in situ Hi-C
ES-E14TG2a
Hi-C on E14Tg2 cell line
control - sox4 gRNA without dCas9
Enzyme
DpnII
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