Workflow CUT&RUN Pipeline, Alignment and Coverage 1.0

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4DNWFVZVPXI1
released
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Merge, trim, align, and generate coverage tracks for CUT&RUN data

   February 18th, 2021 at 4:41pm

Graph

merged_fastq
fastq
input_fastqs_R1
fastq
input_fastqs_R2
fastq
merged_fastq
c13d06cf-218e-4f61-aaf0-91f226248b2c
out_bam
d13d06cf-218e-4f61-aaf0-91f226248b3c
out_bedpe
d13d06cf-218e-4f61-55f0-94f556118b2c
pairout1
c13d06cf-218e-4f61-aaf0-91f226248b2c
pairout2
c13d06cf-218e-4f61-aaf0-91f226248b2c
fastq_merge_1
fastq_merge_2
trim
bowtie2
bamtobed

Graph Legend

Input File
Output File
Input Reference File
Intermediate File