Publications

Included Properties

Data Type
  • Publication9
    • Journal
    Tags
  • 4dn-external-reuse9
    • 4 Common Properties
     Project
    External
     Lab
    External Lab
     Experiment Types
    No value
     Status
    Current
    9 Results
    Title
    Year
    Journal
    Exp Sets
    Project
    Tracing cancer evolution and heterogeneity using Hi-C.
    Erdmann-Pham DDBatra SSTurkalo TKDurbin JBlanchette MYeh IShain HBastian BCSong YSRokhsar DSHockemeyer D
    2023
    Nature communications
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    External
    Transient naive reprogramming corrects hiPS cells functionally and epigenetically.
    Buckberry SLiu XPoppe DTan JPSun GChen JNguyen TVde Mendoza APflueger JFrazer TVargas-Landin DBPaynter JMSmits NLiu NOuyang JFRossello FJChy HSRackham OJLLaslett ALBreen JFaulkner GJNefzger CMPolo JMLister R
    2023
    Nature
    -
    External
    Hypothesis-driven probabilistic modelling enables a principled perspective of genomic compartments.
    Kariti HFeld TKaplan N
    2023
    Nucleic acids research
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    External
    CohesinDB: a comprehensive database for decoding cohesin-related epigenomes, 3D genomes and transcriptomes in human cells.
    Wang JNakato R
    2023
    Nucleic acids research
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    External
    Identifying synergistic high-order 3D chromatin conformations from genome-scale nanopore concatemer sequencing.
    Deshpande ASUlahannan NPendleton MDai XLy LBehr JMSchwenk SLiao WAugello MATyer CRughani PKudman STian HOtis HGAdney EWilkes DMosquera JMBarbieri CEMelnick AStoddart DTurner DJJuul SHarrington EImielinski M
    2022
    Nature biotechnology
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    External
    Double-strand break toxicity is chromatin context independent.
    Friskes AKoob LKrenning LSeverson TMKoeleman ESVergara XSchubert Mvan den Berg JEvers BManjon AGJoosten SKim YZwart WMedema RH
    2022
    Nucleic acids research
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    External
    Learning representations of chromatin contacts using a recurrent neural network identifies genomic drivers of conformation.
    Dsouza KBMaslova AAl-Jibury EMerkenschlager MBhargava VKLibbrecht MW
    2022
    Nature communications
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    External
    Sequence-based modeling of three-dimensional genome architecture from kilobase to chromosome scale.
    Zhou J
    2022
    Nature genetics
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    External
    GWAS4D: multidimensional analysis of context-specific regulatory variant for human complex diseases and traits.
    Huang DYi XZhang SZheng ZWang PXuan CSham PCWang JLi MJ
    2018
    Nucleic acids research
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    External
    - fin -