Publications

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Data Type
Project
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Journal
Experiment Types
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13 Results
Title
Year
Journal
Exp Sets
Project
Extensive folding variability between homologous chromosomes in mammalian cells.
Irastorza-Azcarate IKukalev AKempfer RThieme CJMastrobuoni GMarkowski JLoof GSparks TMBrookes ENatarajan KNSauer SFisher AGNicodemi MRen BSchwarz RFKempa SPombo A
2024
bioRxiv : the preprint server for biology
1
4DN
Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function.
Gholamalamdari Ovan Schaik TWang YKumar PZhang LZhang YHernandez Gonzalez GAVouzas AEZhao PAGilbert DMMa Jvan Steensel BBelmont AS
2024
bioRxiv : the preprint server for biology
18
4DN
Mega-Enhancer Bodies Organize Neuronal Long Genes in the Cerebellum.
Zhao ZParra OPMusella FScrutton-Alvarado NFujita SIAlber FYang YYamada T
2023
bioRxiv : the preprint server for biology
12
4DN
Nucleolus and centromere TSA-Seq reveals variable localization of heterochromatin in different cell types.
Kumar PGholamalamdari OZhang YZhang LVertii Avan Schaik TPeric-Hupkes DSasaki TGilbert DMvan Steensel BMa JKaufman PDBelmont AS
2023
bioRxiv : the preprint server for biology
32
4DN
Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
Bianchi VGeeven GTucker NHilvering CREHall AWRoselli CHill MCMartin JFMargulies KBEllinor PTdeLaat W
2019
bioRxiv
8
External
Dynamic chromatin organization and regulatory interactions in human endothelial cell differentiation.
Alavattam KGMitzelfelt KABonora GFields PAYang XChiu HSPabon LBertero APalpant NJNoble WSMurry CE
2022
Stem cell reports
8
4DN
2022
Nature cell biology
42
4DN
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJZhao PACook ALBarnett RJKlein KNSaulebekova DGe CZhou LSimandi ZMinsk MKTitus KRWang WGong WZhang DYang LVenev SVGibcus JHYang HSasaki TKanemaki MTYue FDekker JChen CLGilbert DMPhillips-Cremins JE
2022
Nature
66
4DN
Allelic reprogramming of 3D chromatin architecture during early mammalian development.
Du ZZheng HHuang BMa RWu JZhang XHe JXiang YWang QLi YMa JZhang XZhang KWang YZhang MQGao JDixon JRWang XZeng JXie W
2017
Nature
18
External
Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.
Sima JChakraborty ADileep VMichalski MKlein KNHolcomb NPTurner JLPaulsen MTRivera-Mulia JCTrevilla-Garcia CBartlett DAZhao PAWashburn BKNora EPKraft KMundlos SBruneau BGLjungman MFraser PAy FGilbert DM
2019
Cell
9
4DN
2019
The Journal of biological chemistry
2
External
Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler.
Chen YZhang YWang YZhang LBrinkman EKAdam SAGoldman Rvan Steensel BMa JBelmont AS
2018
The Journal of cell biology
28
4DN
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