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Data Type
  • File69597
    • Project
    Experiment Type
    Assay Details
    Biosource
    File Properties
    File Type
    File Format
    File Size
    Generating Lab
    Experimental Lab
    Input of Workflow
    Output of Workflow
    Status
    2 Common Properties
     Commendations
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     Warnings
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    Title
    Type
    Experiment Type
    Dataset
    Condition
    Assay Details
    Biosource
    File Type
    File Format
    In experiment as
    Replicate info
    Generating Lab
    Experimental Lab
    File Size
    Experiment Set
    4DNFIQEWJ3AN.bw
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    control - DMSO treatment
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Compartments
    bw
    processed file
    merged replicates
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    203.62 kB
    4DNESBBJHHJ7
    4DNFI3A8EFNN.bw
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Compartments
    bw
    processed file
    merged replicates
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    203.89 kB
    4DNESHNKZ18R
    4DNFIFV23ILF.mcool
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    control - DMSO treatment
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Contact Matrix
    mcool
    processed file
    merged replicates
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    3.62 GB
    4DNESBBJHHJ7
    4DNFIKMJRM5C.hic
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    control - DMSO treatment
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Contact Matrix
    hic
    processed file
    merged replicates
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    5.32 GB
    4DNESBBJHHJ7
    4DNFI5YLRQ8T.pairs.gz
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    control - DMSO treatment
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Contact List-combined
    pairs
    processed file
    merged replicates
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    16.26 GB
    4DNESBBJHHJ7
    4DNFIV1TAIKG.mcool
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Contact Matrix
    mcool
    processed file
    merged replicates
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    3.09 GB
    4DNESHNKZ18R
    4DNFINQKY5AH.hic
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Contact Matrix
    hic
    processed file
    merged replicates
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    4.58 GB
    4DNESHNKZ18R
    4DNFIPD9B9QE.pairs.gz
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Contact List-combined
    pairs
    processed file
    merged replicates
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    13.08 GB
    4DNESHNKZ18R
    4DNFINP5RCZJ.pairs.gz
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    control - DMSO treatment
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Contact List-replicate
    pairs
    processed file
    Biorep 2, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    8.52 GB
    4DNESBBJHHJ7
    4DNFIJ52XPKE.bam
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    control - DMSO treatment
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Alignments
    bam
    processed file
    Biorep 2, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    125.19 GB
    4DNESBBJHHJ7
    4DNFIPKFERUO.pairs.gz
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    control - DMSO treatment
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Contact List-replicate
    pairs
    processed file
    Biorep 1, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    9.44 GB
    4DNESBBJHHJ7
    4DNFIBETKNFB.bam
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    control - DMSO treatment
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Alignments
    bam
    processed file
    Biorep 1, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    142.5 GB
    4DNESBBJHHJ7
    4DNFIRTJO955.pairs.gz
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Contact List-replicate
    pairs
    processed file
    Biorep 2, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    8.14 GB
    4DNESHNKZ18R
    4DNFIDV4KFYA.bam
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Alignments
    bam
    processed file
    Biorep 2, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    121.7 GB
    4DNESHNKZ18R
    4DNFINNFF9RI.pairs.gz
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Contact List-replicate
    pairs
    processed file
    Biorep 1, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    6.3 GB
    4DNESHNKZ18R
    4DNFI73UZCGX.bam
    FileProcessed
    in situ Hi-C
    Hi-C on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    DdeI and DpnII
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Alignments
    bam
    processed file
    Biorep 1, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    99.94 GB
    4DNESHNKZ18R
    4DNFI3F32H8H.tsv
    FileProcessed
    RNA-seq
    RNA-seq on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    -
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Isoform Expression
    tsv
    processed file
    Biorep 1, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    29.63 MB
    4DNES3VK9UBA
    4DNFIBD1INNK.tsv
    FileProcessed
    RNA-seq
    RNA-seq on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    -
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Gene Expression
    tsv
    processed file
    Biorep 1, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    10.3 MB
    4DNES3VK9UBA
    4DNFIMXO61ZN.bw
    FileProcessed
    RNA-seq
    RNA-seq on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    -
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Read Counts
    bw
    processed file
    Biorep 1, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    107.32 MB
    4DNES3VK9UBA
    4DNFI3PZWBFI.bam
    FileProcessed
    RNA-seq
    RNA-seq on TBX5 depletion in WTC-11 differentiated to atrial cardiac muscle cell
    dTAGv1 TBX5 depletion
    -
    dTAG-TBX5 iPSC line differentiated to cardiac muscle cell
    Read Positions
    bam
    processed file
    Biorep 1, Techrep 1
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    2.63 GB
    4DNES3VK9UBA
    4DNFINGKVXYW.bam
    FileProcessed
    -
    -
    -
    -
    -
    Intermediate File
    bam
    -
    -
    4DN DCIC, HMS
    -
    124.22 GB
    -
    4DNFIJLX9N1K.bam
    FileProcessed
    -
    -
    -
    -
    -
    Intermediate File
    bam
    -
    -
    4DN DCIC, HMS
    -
    43.1 GB
    -
    4DNFIYERMA8Q.bam
    FileProcessed
    -
    -
    -
    -
    -
    Intermediate File
    bam
    -
    -
    4DN DCIC, HMS
    -
    134.39 GB
    -
    4DNFIPZVMD12.bam
    FileProcessed
    -
    -
    -
    -
    -
    Intermediate File
    bam
    -
    -
    4DN DCIC, HMS
    -
    54.81 GB
    -
    4DNFIDHXA4EH.bam
    FileProcessed
    -
    -
    -
    -
    -
    Intermediate File
    bam
    -
    -
    4DN DCIC, HMS
    -
    114.38 GB
    -