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63250 Results

Included Properties

Data Type
  • File63250
    • Project
    Experiment Type
    Assay Details
    Biosource
    File Properties
    File Type
    File Format
    File Size
    Generating Lab
    Experimental Lab
    Input of Workflow
    Output of Workflow
    Status
    2 Common Properties
     Commendations
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    Title
    Type
    Experiment Type
    Dataset
    Condition
    Assay Details
    Biosource
    File Type
    File Format
    In experiment as
    Replicate info
    Generating Lab
    Experimental Lab
    File Size
    Experiment Set
    4DNFI6ITMDQS.matrix
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    chicken heart
    -
    heart
    Gene-cell Expression Matrix
    matrix
    Analysis results provided by the data submitters - the Deng Lab
    merged replicates
    Xinxian Deng, UW
    Xinxian Deng, UW
    66.12 MB
    4DNESFBNCNZW
    4DNFIFI3FWM9.matrix
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    chicken brain
    -
    brain
    Gene-cell Expression Matrix
    matrix
    Analysis results provided by the data submitters - the Deng Lab
    merged replicates
    Xinxian Deng, UW
    Xinxian Deng, UW
    273.2 MB
    4DNESTECV5Q3
    4DNFIXHP9PZK.matrix
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    mouse heart
    -
    heart
    Gene-cell Expression Matrix
    matrix
    Analysis results provided by the data submitters - the Deng Lab
    unreplicated
    Xinxian Deng, UW
    Xinxian Deng, UW
    15.44 MB
    4DNESCPR9K17
    4DNFIZ2WJGJT.matrix
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    mouse brain
    -
    brain
    Gene-cell Expression Matrix
    matrix
    Analysis results provided by the data submitters - the Deng Lab
    unreplicated
    Xinxian Deng, UW
    Xinxian Deng, UW
    36.43 MB
    4DNESUVYMFW8
    4DNFIQZ22133.matrix
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    opposum brain
    -
    brain
    Gene-cell Expression Matrix
    matrix
    Analysis results provided by the data submitters - the Deng Lab
    merged replicates
    Xinxian Deng, UW
    Xinxian Deng, UW
    458.48 MB
    4DNESSQAODXS
    4DNFI9176SAB.csv.gz
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    mixed species
    -
    -
    Gene Annotation
    compressed_csv
    Analysis results provided by the data submitters - the Deng Lab
    -
    Xinxian Deng, UW
    Xinxian Deng, UW
    319.76 kB
    1. 4DNESSQAODXS
    2. 4DNESCPR9K17
    3. 4DNESFBNCNZW
    4. 4DNESTECV5Q3
    5. 4DNESUVYMFW8
    4DNFIR6L86SN.csv.gz
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    chicken heart
    -
    heart
    Cell Annotation
    compressed_csv
    Analysis results provided by the data submitters - the Deng Lab
    merged replicates
    Xinxian Deng, UW
    Xinxian Deng, UW
    571.63 kB
    4DNESFBNCNZW
    4DNFINCSHIBW.csv.gz
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    chicken brain
    -
    brain
    Cell Annotation
    compressed_csv
    Analysis results provided by the data submitters - the Deng Lab
    merged replicates
    Xinxian Deng, UW
    Xinxian Deng, UW
    1.02 MB
    4DNESTECV5Q3
    4DNFIL31TK1V.csv.gz
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    mouse heart
    -
    heart
    Cell Annotation
    compressed_csv
    Analysis results provided by the data submitters - the Deng Lab
    unreplicated
    Xinxian Deng, UW
    Xinxian Deng, UW
    105.77 kB
    4DNESCPR9K17
    4DNFILZRRBN1.csv.gz
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    mouse brain
    -
    brain
    Cell Annotation
    compressed_csv
    Analysis results provided by the data submitters - the Deng Lab
    unreplicated
    Xinxian Deng, UW
    Xinxian Deng, UW
    189.38 kB
    4DNESUVYMFW8
    4DNFIYW8YWQ2.csv.gz
    FileProcessed
    sci-RNA-seq
    sciRNA-seq on mixed species and organs
    opposum brain
    -
    brain
    Cell Annotation
    compressed_csv
    Analysis results provided by the data submitters - the Deng Lab
    merged replicates
    Xinxian Deng, UW
    Xinxian Deng, UW
    1.35 MB
    4DNESSQAODXS
    4DNFILGEPZ1K.bed.gz
    FileReference
    -
    -
    -
    -
    -
    Target Regions
    bed
    -
    -
    Bing Ren, UCSD
    -
    56.63 kB
    -
    4DNFIZXBR2PA.tsv.gz
    FileReference
    -
    -
    -
    -
    -
    Oligo Sequences
    compressed_tsv
    -
    -
    Bing Ren, UCSD
    -
    643 Bytes
    -
    4DNFIJGVEKRX.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    Knock-out of Kat6b
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    15.33 MB
    4DNESJ15KEBD
    4DNFI1D6S3HM.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting Rad21 (control)
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    5.51 MB
    4DNESQD7KQVS
    4DNFIUX6GTJ1.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting Rad21 treated with dtag
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    9.51 MB
    4DNESTLJOO1C
    4DNFIP1EKJ7Z.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 + 6hr recovery (control)
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    22.59 MB
    4DNESE2MH977
    4DNFIH5BHP3E.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF with 12hr treatment of A485 (control)
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    53.19 MB
    4DNES2LZ7D8W
    4DNFILU5QBU3.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF in 24hr differentiation media (control)
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    4.94 MB
    4DNESG53SEUU
    4DNFI613CB75.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF (control)
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    5.59 MB
    4DNESX8IACI3
    4DNFIASTFTRF.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485 + 6hr recovery
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    10 MB
    4DNESKBC3QBS
    4DNFIVP2CYLF.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag with 12hr treatment of A485
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    6.04 MB
    4DNES9946GB9
    4DNFIYDIIXZQ.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag in 24hr differentiation media
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    54.47 MB
    4DNES3QUSY1F
    4DNFIASUW718.csv
    FileProcessed
    multiplexed FISH
    Multiplexed FISH in Sox2 tagged F123-CASTx129 with 4CBS insertions between Sox2 and SE
    FKBP12(F36V) degron targeting CTCF treated with dtag
    101 40-bp regions on Chr11 (mouse), 4470 40-bp on the 205kb stretch from Sox2 gene to SE and surrounding regions (mouse), Chromosomes
    F123-CASTx129 with Sox2 tags and RMCE site between Sox2 and its SE
    FOF-CT - DNA-spot/trace Core
    csv
    processed file
    Biorep 1, Techrep 1
    Bing Ren, UCSD
    Bing Ren, UCSD
    4.77 MB
    4DNESI7RG1SM
    4DNFIYT914XX.bw
    FileProcessed
    ChIP-seq
    WTC-11 differentiated to cardiac muscle cell
    CTCF ChIP-seq on an allelic series of iPSCs 20 day differentiation to cardiac cells - TBX5 heterozygous
    CTCF protein
    WTC-11 differentiated to cardiac muscle cell
    Signal Fold Change
    bw
    processed file
    merged replicates
    4DN DCIC, HMS
    Benoit Bruneau, UCSF
    2.12 GB
    4DNES6ZVXH6F