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Data Type
  • ExperimentSetReplicate40
    • Project
    Lab
    Experiment Type
  • multiplexed FISH40
    • Dataset
    Organism
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
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    Assay Details
    Center
    file_type
  • localizations0
    • Warnings
    4 Common Properties
     Experiment Category
    Microscopy
     Set Type
    Replicate
     Status
    Released
     Commendations
    No value
    40 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESG8AL3UY
    multiplexed FISH
    embryo
    Chromatin tracing of BX-C in Drosophila
    Fub Heterozygous mutant, 10-kb resolution
    Target
    70 consecutive 10-kb loci in the BX-C region (fruit fly), 29 mRNAs and nascent RNAs (fruit fly)
    Alistair Boettiger, STANFORD
    4DNESPSDU14J
    multiplexed FISH
    embryo
    Chromatin tracing of BX-C in Drosophila
    Fub Homozygous mutant, 10-kb resolution
    Target
    70 consecutive 10-kb loci in the BX-C region (fruit fly), 29 mRNAs and nascent RNAs (fruit fly)
    Alistair Boettiger, STANFORD
    4DNESWM4U8RX
    multiplexed FISH
    embryo
    Chromatin tracing of BX-C in Drosophila
    WT at Fub locus, 10-kb resolution
    Target
    70 consecutive 10-kb loci in the BX-C region (fruit fly), 29 mRNAs and nascent RNAs (fruit fly)
    Alistair Boettiger, STANFORD
    4DNESID7GI8N
    multiplexed FISH
    H9 differentiated to cranial neural crest
    Chromatin tracing of Sox9 in CNCC
    CNCCs with CTCF deletion at SOX9 promoter (steps #7-58)
    Target
    80 spaced regions at SOX9 locus
    Alistair Boettiger, STANFORD
    4DNESNIOLISN
    multiplexed FISH
    H9 differentiated to cranial neural crest
    Chromatin tracing of Sox9 in CNCC
    CNCCs with CTCF deletion at E1.35 (steps #7-58)
    Target
    80 spaced regions at SOX9 locus
    Alistair Boettiger, STANFORD
    4DNESEQDL9UR
    multiplexed FISH
    H9 differentiated to cranial neural crest
    Chromatin tracing of Sox9 in CNCC
    CNCCs wt (steps #7-58)
    Target
    80 spaced regions at SOX9 locus
    Alistair Boettiger, STANFORD
    4DNESWPT973M
    multiplexed FISH
    H9 differentiated to cranial neural crest
    Chromatin tracing of Sox9 in CNCC
    CNCCs wt (steps #1-80)
    Target
    80 spaced regions at SOX9 locus
    Alistair Boettiger, STANFORD
    4DNESL3FF6MP
    multiplexed FISH
    H9
    Chromatin tracing of Sox9 in CNCC
    ESCs wt, undifferentiated (steps #1-80)
    Target
    80 spaced regions at SOX9 locus
    Alistair Boettiger, STANFORD
    4DNES4TC13IL
    multiplexed FISH
    limb bud
    Chromatin tracing of mouse Pitx1 locus
    Mouse limb buds
    Target
    consecutive 10-kb regions at Pidx1 locus (mouse)
    Alistair Boettiger, STANFORD
    4DNESABVQJTS
    multiplexed FISH
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Chromatin tracing of 2-Mb on chr21
    Chr21:34-37 Mb in HCT116 cells cohesin-depleted after cell division
    Target
    83 consecutive 30-kb loci on chr21, Geminin, EdU labeled Chromosomes
    Alistair Boettiger, STANFORD
    4DNES67C81FH
    multiplexed FISH
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Chromatin tracing of 2-Mb on chr21
    Chr21:34-37 Mb in HCT116 cells cohesin-depleted
    Target
    83 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNES4AGJSQY
    multiplexed FISH
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Chromatin tracing of 2-Mb on chr21
    Chr21:34-37 Mb in HCT116 cells
    Target
    83 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNESGAO6AWG
    multiplexed FISH
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in HCT116 cells cohesin-depleted
    Target
    65 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNES6ZQ6SWJ
    multiplexed FISH
    HCT116 with Crispr generated mClover and AID-tagged RAD21
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in HCT116 cells
    Target
    65 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNESL619Z5V
    multiplexed FISH
    A549
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in A549 cells
    Target
    65 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNEST5FUQKC
    multiplexed FISH
    K562
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in K562 cells
    Target
    65 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNESSXNNJUB
    multiplexed FISH
    IMR-90
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in IMR90 cells across cell cycle
    Target
    65 consecutive 30-kb loci on chr21, Geminin, Chromosomes
    Alistair Boettiger, STANFORD
    4DNES4XDIR9E
    multiplexed FISH
    IMR-90
    Chromatin tracing of 2-Mb on chr21
    Chr21:28-30 Mb in IMR90 cells
    Target
    65 consecutive 30-kb loci on chr21
    Alistair Boettiger, STANFORD
    4DNES97DWLA6
    multiplexed FISH
    IMR-90
    Chromatin tracing of 2-Mb on chr21
    Chr21:18-20 Mb (no TADs) in IMR90 cells
    Target
    65 consecutive 30-kb loci in a region without TADs on chr21
    Alistair Boettiger, STANFORD
    4DNESBR4BVOZ
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, untreated, open chromatin region
    Target
    28 consecutive 30-kb loci on chrX (open chromatin), XIST transcript
    Siyuan Wang, YALE
    4DNESSJUM54F
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, untreated, closed chromatin region
    Target
    28 consecutive 30-kb loci on chrX (closed chromatin), XIST transcript
    Siyuan Wang, YALE
    4DNES5XKLWKW
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, DNA methylation inhibitor
    Target
    28 consecutive 30-kb loci on chrX, XIST transcript
    Siyuan Wang, YALE
    4DNES73TYNAK
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, EZH2 methyltransferase inhibitor
    Target
    28 consecutive 30-kb loci on chrX, XIST transcript
    Siyuan Wang, YALE
    4DNES4Y519FW
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, hyper histone methylation
    Target
    28 consecutive 30-kb loci on chrX, XIST transcript
    Siyuan Wang, YALE
    4DNES82IH3OG
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX
    IMR90 cells, transcription inhibitor
    Target
    28 consecutive 30-kb loci on chrX, XIST transcript
    Siyuan Wang, YALE