Included Properties
Data Type
Project
Lab
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
file_type
Warnings
4 Common Properties
Experiment Category
Microscopy
Set Type
Replicate
Status
Released
Commendations
No value
115 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
IMR-90
Genome-scale imaging in IMR90 cells
DNA-MERFISH of 1041 genomic loci (alpha-amanitin treated)
Target
Chromosomes, region
multiplexed FISH
IMR-90
Genome-scale imaging in IMR90 cells
DNA-MERFISH + RNA-MERFISH of 1137 genes
Target
Chromosomes, transcript, region
multiplexed FISH
IMR-90
Genome-scale imaging in IMR90 cells
DNA-MERFISH of 1041 genomic loci
Target
Chromosomes, region
multiplexed FISH
R1 mESC line
Multiplexed FISH in R1 mESCs
Non-Targeting control
Target
40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
multiplexed FISH
R1 mESC line
Multiplexed FISH in R1 mESCs
7.5-kb USP Prdm8
Target
40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
multiplexed FISH
R1 mESC line
Multiplexed FISH in R1 mESCs
33-kb USF Fgf5
Target
40 5kb-regions with 5kb intervals at Prdm8-Fgf5 locus (mouse)
multiplexed FISH
whole fruit fly
Multiplexed FISH in Drosophila embryos
Nuclear cycle 14 (nc14) of developmental stage
Target
34 oligos in dpp locus (fruit fly), Chromosomes
multiplexed FISH
whole fruit fly
Multiplexed FISH in Drosophila embryos
Nuclear cycle 12 (nc12) of developmental stage
Target
34 oligos in dpp locus (fruit fly), Chromosomes
multiplexed FISH
ES-E14TG2a
Multiplexed FISH in mouse ESC-E14
ORCA + RNA-FISH for 44 SEs 15-kb resolution
Target
374 genomic regions, 21 transcripts
multiplexed FISH
ES-E14TG2a
Multiplexed FISH in mouse ESC-E14
ORCA for 376 SEs 15-kb resolution
Target
374 genomic regions
multiplexed FISH
primary motor cortex
Chromatin tracing in mouse primary motor cortex
Mouse primary motor cortex - mecp2 KO
Target
2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse), Mecp2 mouse protein
multiplexed FISH
primary motor cortex
Chromatin tracing in mouse primary motor cortex
Mouse primary motor cortex - Wild type
Target
2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse)
multiplexed FISH
IMR-90
Chromatin tracing of single chromosomes
Chromatin tracing of chrX (Xi) in human IMR90 cells
Target
20 TADs on ChrX #1-20, 20 TADs on ChrX #21-40, 40 TADs on ChrX #1-40
multiplexed FISH
IMR-90
Chromatin tracing of single chromosomes
Chromatin tracing of chrX (Xa) in human IMR90 cells
Target
20 TADs on ChrX #1-20, 20 TADs on ChrX #21-40, 40 TADs on ChrX #1-40
multiplexed FISH
IMR-90
Chromatin tracing of single chromosomes
Chromatin tracing of chr22 in human IMR90 cells
Target
14 TADs on Chr22 #1-14, 13 TADs on Chr22 #15-27, 27 TADs on Chr22 #1-27
multiplexed FISH
IMR-90
Chromatin tracing of single chromosomes
Chromatin tracing of chr21 in human IMR90 cells
Target
17 TADs on Chr21 #1-17, 17 TADs on Chr21 #18-34, 34 TADs on Chr21 #1-34
multiplexed FISH
IMR-90
Chromatin tracing of single chromosomes
Chromatin tracing of chr20 in human IMR90 cells
Target
15 TADs on Chr20 #1-15, 15 TADs on Chr20 #15-30, 30 TADs on Chr20 #1-30
multiplexed FISH
IMR-90
Chromatin tracing of chrX in IMR90
IMR90 mTeSR1
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
IMR-90
Chromatin tracing of chrX in IMR90
IMR90 5iLAF
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
IMR-90
Chromatin tracing of chrX in IMR90
IMR90 5iLA
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
HES-3
Chromatin tracing of chrX in HES3
HES3 mTeSR1
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
HES-3
Chromatin tracing of chrX in HES3
HES3 5iLAF
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
HES-3
Chromatin tracing of chrX in HES3
HES3 5iLA
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
HES-3
Chromatin tracing of chrX in HES3
HES3 4iLAF+tMEKi
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)
multiplexed FISH
H9
Chromatin tracing of chrX in H9
H9 mTeSR1
Target
20 TADs chrX (1-20), 20 TADs chrX (21-40)