Properties
Data Type
Project
Lab
Experiment Type
Dataset
Organism
Sample Type
Sample Tier
Sample Category
Sample
Organ/System
Tissue Source
Publication
Modifications
Treatments
Assay Details
Center
file_type
Warnings
4 Common Properties
Experiment Category
Microscopy
Set Type
Replicate
Status
Released
Commendations
No value
40 Results
Title
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
multiplexed FISH
embryo
Chromatin tracing of BX-C in Drosophila
Fub Heterozygous mutant, 10-kb resolution
Target
70 consecutive 10-kb loci in the BX-C region (fruit fly), 29 mRNAs and nascent RNAs (fruit fly)
multiplexed FISH
embryo
Chromatin tracing of BX-C in Drosophila
Fub Homozygous mutant, 10-kb resolution
Target
70 consecutive 10-kb loci in the BX-C region (fruit fly), 29 mRNAs and nascent RNAs (fruit fly)
multiplexed FISH
embryo
Chromatin tracing of BX-C in Drosophila
WT at Fub locus, 10-kb resolution
Target
70 consecutive 10-kb loci in the BX-C region (fruit fly), 29 mRNAs and nascent RNAs (fruit fly)
multiplexed FISH
H9 differentiated to cranial neural crest
Chromatin tracing of Sox9 in CNCC
CNCCs with CTCF deletion at SOX9 promoter (steps #7-58)
Target
80 spaced regions at SOX9 locus
multiplexed FISH
H9 differentiated to cranial neural crest
Chromatin tracing of Sox9 in CNCC
CNCCs with CTCF deletion at E1.35 (steps #7-58)
Target
80 spaced regions at SOX9 locus
multiplexed FISH
H9 differentiated to cranial neural crest
Chromatin tracing of Sox9 in CNCC
CNCCs wt (steps #7-58)
Target
80 spaced regions at SOX9 locus
multiplexed FISH
H9 differentiated to cranial neural crest
Chromatin tracing of Sox9 in CNCC
CNCCs wt (steps #1-80)
Target
80 spaced regions at SOX9 locus
multiplexed FISH
H9
Chromatin tracing of Sox9 in CNCC
ESCs wt, undifferentiated (steps #1-80)
Target
80 spaced regions at SOX9 locus
multiplexed FISH
limb bud
Chromatin tracing of mouse Pitx1 locus
Mouse limb buds
Target
consecutive 10-kb regions at Pidx1 locus (mouse)
multiplexed FISH
HCT116 with Crispr generated mClover and AID-tagged RAD21
Chromatin tracing of 2-Mb on chr21
Chr21:34-37 Mb in HCT116 cells cohesin-depleted after cell division
Target
83 consecutive 30-kb loci on chr21, Geminin, EdU labeled Chromosomes
multiplexed FISH
HCT116 with Crispr generated mClover and AID-tagged RAD21
Chromatin tracing of 2-Mb on chr21
Chr21:34-37 Mb in HCT116 cells cohesin-depleted
Target
83 consecutive 30-kb loci on chr21
multiplexed FISH
HCT116 with Crispr generated mClover and AID-tagged RAD21
Chromatin tracing of 2-Mb on chr21
Chr21:34-37 Mb in HCT116 cells
Target
83 consecutive 30-kb loci on chr21
multiplexed FISH
HCT116 with Crispr generated mClover and AID-tagged RAD21
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in HCT116 cells cohesin-depleted
Target
65 consecutive 30-kb loci on chr21
multiplexed FISH
HCT116 with Crispr generated mClover and AID-tagged RAD21
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in HCT116 cells
Target
65 consecutive 30-kb loci on chr21
multiplexed FISH
A549
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in A549 cells
Target
65 consecutive 30-kb loci on chr21
multiplexed FISH
K562
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in K562 cells
Target
65 consecutive 30-kb loci on chr21
multiplexed FISH
IMR-90
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in IMR90 cells across cell cycle
Target
65 consecutive 30-kb loci on chr21, Geminin, Chromosomes
multiplexed FISH
IMR-90
Chromatin tracing of 2-Mb on chr21
Chr21:28-30 Mb in IMR90 cells
Target
65 consecutive 30-kb loci on chr21
multiplexed FISH
IMR-90
Chromatin tracing of 2-Mb on chr21
Chr21:18-20 Mb (no TADs) in IMR90 cells
Target
65 consecutive 30-kb loci in a region without TADs on chr21
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, untreated, open chromatin region
Target
28 consecutive 30-kb loci on chrX (open chromatin), XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, untreated, closed chromatin region
Target
28 consecutive 30-kb loci on chrX (closed chromatin), XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, DNA methylation inhibitor
Target
28 consecutive 30-kb loci on chrX, XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, EZH2 methyltransferase inhibitor
Target
28 consecutive 30-kb loci on chrX, XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, hyper histone methylation
Target
28 consecutive 30-kb loci on chrX, XIST transcript
multiplexed FISH
IMR-90
Chromatin tracing of chrX
IMR90 cells, transcription inhibitor
Target
28 consecutive 30-kb loci on chrX, XIST transcript