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  • ExperimentSetReplicate107
    • Project
    Lab
    Experiment Type
  • FISH
  • multiplexed FISH107
    • Dataset
    Organism
    Sample Type
    Sample Tier
    Sample Category
    Sample
    Organ/System
    Tissue Source
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  • localizations1
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    4 Common Properties
     Experiment Category
    Microscopy
     Set Type
    Replicate
     Status
    Released
     Commendations
    No value
    107 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES44GBU46
    multiplexed FISH
    ES-E14TG2a
    Multiplexed FISH in mouse ESC-E14
    ORCA + RNA-FISH for 44 SEs 15-kb resolution
    Target
    374 genomic regions, 21 transcripts
    Alistair Boettiger, STANFORD
    4DNESABI2R6T
    multiplexed FISH
    ES-E14TG2a
    Multiplexed FISH in mouse ESC-E14
    ORCA for 376 SEs 15-kb resolution
    Target
    374 genomic regions
    Alistair Boettiger, STANFORD
    4DNESPE924IP
    multiplexed FISH
    primary motor cortex
    Chromatin tracing in mouse primary motor cortex
    Mouse primary motor cortex - mecp2 KO
    Target
    2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse), Mecp2 mouse protein
    Xiaowei Zhuang, HARVARD
    4DNESMTNNB3N
    multiplexed FISH
    primary motor cortex
    Chromatin tracing in mouse primary motor cortex
    Mouse primary motor cortex - Wild type
    Target
    2000 loci (mouse), Chromosomes, MOp RNA-MERFISH (mouse)
    Xiaowei Zhuang, HARVARD
    4DNESNXGTR38
    multiplexed FISH
    IMR-90
    Chromatin tracing of single chromosomes
    Chromatin tracing of chrX (Xi) in human IMR90 cells
    Target
    20 TADs on ChrX #1-20, 20 TADs on ChrX #21-40, 40 TADs on ChrX #1-40
    Siyuan Wang, YALE
    4DNESONPGYU9
    multiplexed FISH
    IMR-90
    Chromatin tracing of single chromosomes
    Chromatin tracing of chrX (Xa) in human IMR90 cells
    Target
    20 TADs on ChrX #1-20, 20 TADs on ChrX #21-40, 40 TADs on ChrX #1-40
    Siyuan Wang, YALE
    4DNESR9M2CET
    multiplexed FISH
    IMR-90
    Chromatin tracing of single chromosomes
    Chromatin tracing of chr22 in human IMR90 cells
    Target
    14 TADs on Chr22 #1-14, 13 TADs on Chr22 #15-27, 27 TADs on Chr22 #1-27
    Siyuan Wang, YALE
    4DNESC1DDSAH
    multiplexed FISH
    IMR-90
    Chromatin tracing of single chromosomes
    Chromatin tracing of chr21 in human IMR90 cells
    Target
    17 TADs on Chr21 #1-17, 17 TADs on Chr21 #18-34, 34 TADs on Chr21 #1-34
    Siyuan Wang, YALE
    4DNESFLAEE5P
    multiplexed FISH
    IMR-90
    Chromatin tracing of single chromosomes
    Chromatin tracing of chr20 in human IMR90 cells
    Target
    15 TADs on Chr20 #1-15, 15 TADs on Chr20 #15-30, 30 TADs on Chr20 #1-30
    Siyuan Wang, YALE
    4DNESDSVRJBX
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX in IMR90
    IMR90 mTeSR1
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESCJ8M34U
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX in IMR90
    IMR90 5iLAF
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESA6RWUVI
    multiplexed FISH
    IMR-90
    Chromatin tracing of chrX in IMR90
    IMR90 5iLA
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESQFTK11H
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 mTeSR1
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESWLIGBX4
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 5iLAF
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESCTENQBB
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 5iLA
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNES5ZXOL2B
    multiplexed FISH
    HES-3
    Chromatin tracing of chrX in HES3
    HES3 4iLAF+tMEKi
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESKP8EO7E
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 mTeSR1
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESPADIUQ8
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 combined conditions, XIST positive chromosome
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE
    4DNES7BT3MHL
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 combined conditions, XIST negative chromosome
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE
    4DNES9551WCX
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 5iLAF
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESYMNKD6G
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 5iLA
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESL23Q1IG
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 5iLA ATRX, positive chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), ATRX
    Siyuan Wang, YALE
    4DNESXANJGRL
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 5iLA ATRX, negative chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), ATRX
    Siyuan Wang, YALE
    4DNES8DN67K9
    multiplexed FISH
    H9
    Chromatin tracing of chrX in H9
    H9 4iLAF+tMEKi
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40)
    Siyuan Wang, YALE
    4DNESSFIJDGY
    multiplexed FISH
    H7-hESC
    Chromatin tracing of chrX in H7
    H7 day6 XIST positive chromosomes
    Target
    20 TADs chrX (1-20), 20 TADs chrX (21-40), XIST transcript
    Siyuan Wang, YALE