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Included Properties

Data Type
  • ExperimentSetReplicate1
  • Experiment Set1
    • Experiment Type
  • Ligation-free 3C
  • RNA-DNA SPRITE1
  • Hi-C
  • in situ Hi-C487
  • Dilution Hi-C118
  • Micro-C26
  • DNase Hi-C25
  • TCC14
  • FISH
  • DNA FISH277
  • multiplexed FISH129
  • RNA FISH85
  • DNA binding
  • ChIP-seq283
  • CUT&RUN63
  • ChIP-exo3
  • CUT&Tag2
  • Transcription
  • RNA-seq200
  • SLAM-seq28
  • single cell RNA-seq23
  • sci-RNA-seq15
  • Droplet paired-tag2
  • Bru-seq1
  • Proximity-seq
  • TSA-seq109
  • pA-DamID50
  • DamID-seq30
  • NAD-seq12
  • Replication timing
  • Multi-stage Repli-seq100
  • 2-stage Repli-seq70
  • Immunofluorescence
  • Immunofluorescence143
  • Open Chromatin
  • ATAC-seq73
  • single cell ATAC-seq18
  • RE-seq11
  • sci-ATAC-seq9
  • SPT
  • SPT101
  • IP-based 3C
  • PLAC-seq35
  • in situ ChIA-PET22
  • HiChIP7
  • ChIA-PET4
    • View 9 More173
    Status
  • Released1
    • Warnings
    18 Common Properties
     Project
    4DN
     Lab
    Mitchell Guttman, CALTECH
     Experiment Category
    Sequencing
     Dataset
    RNA-DNA SPRITE on pSM33 mESCs
     Organism
    Mouse
     Sample Type
    stem cells
     Sample Tier
    Unclassified
     Sample Category
    Mouse stem cell
     Sample
    pSM33 with insertion of Tet-On activator M2rtTA at ROSA26, targeted integration of Xist with dox-inducible promoter
     Organ/System
    No value
     Tissue Source
    stem cell
     Publication
    Quinodoz SA et al. (2018) doi:10.1016/j.cell.2018.05.024
     Modifications
    No value
     Treatments
    Chemical
     Assay Details
    No value
     Center
    NBC - Guttman
     Set Type
    Replicate
     Commendations
    No value
    1 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNESAXNFKMM
    RNA-DNA SPRITE
    pSM33 with insertion of Tet-On activator M2rtTA at ROSA26, targeted integration of Xist with dox-inducible promoter
    RNA-DNA SPRITE on pSM33 mESCs
    -
    -
    Mitchell Guttman, CALTECH
    - fin -