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Included Properties

Data Type
  • ExperimentSetReplicate1
  • Experiment Set1
    • Experiment Type
  • Transcription
  • Bru-seq1
  • Hi-C
  • in situ Hi-C487
  • Dilution Hi-C118
  • Micro-C26
  • DNase Hi-C25
  • TCC14
  • FISH
  • DNA FISH277
  • multiplexed FISH129
  • RNA FISH85
  • DNA binding
  • ChIP-seq283
  • CUT&RUN63
  • ChIP-exo3
  • CUT&Tag2
  • Transcription
  • RNA-seq200
  • SLAM-seq28
  • single cell RNA-seq23
  • sci-RNA-seq15
  • Droplet paired-tag2
  • Proximity-seq
  • TSA-seq109
  • pA-DamID50
  • DamID-seq30
  • NAD-seq12
  • Replication timing
  • Multi-stage Repli-seq100
  • 2-stage Repli-seq70
  • Immunofluorescence
  • Immunofluorescence143
  • Open Chromatin
  • ATAC-seq73
  • single cell ATAC-seq18
  • RE-seq11
  • sci-ATAC-seq9
  • SPT
  • SPT101
  • IP-based 3C
  • PLAC-seq35
  • in situ ChIA-PET22
  • HiChIP7
  • ChIA-PET4
    • View 9 More173
    Sample Category
  • Mouse stem cell1
  • Tier 21
    • Status
  • Released1
    • 18 Common Properties
     Project
    4DN
     Lab
    David Gilbert, SDBRI
     Experiment Category
    Sequencing
     Dataset
    Bru-seq on F121-9 mESCs
     Organism
    Mouse
     Sample Type
    stem cells
     Sample Tier
    Unclassified
     Sample
    F121-9-CASTx129
     Organ/System
    No value
     Tissue Source
    stem cell
     Publication
    Sima J et al. (2019) PMID:30595451
     Modifications
    No value
     Treatments
    No value
     Assay Details
    Target: BrU labeled Transcripts
     Center
    NOFIC - Belmont
     Set Type
    Replicate
     Commendations
    No value
     Warnings
    Biosample Metadata Incomplete
    1 Results
    Title
    Experiment Type
    Biosample
    Dataset
    Condition
    Assay Details
    Lab
    4DNES5FD85L1
    Bru-seq
    F121-9-CASTx129
    Bru-seq on F121-9 mESCs
    wild-type
    Target
    BrU labeled Transcripts
    David Gilbert, SDBRI
    - fin -