ImagingPath
ORCA labeling of 188 SEs imaged using Alexa 750

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Sequential DNA FISH to detect 188 super enhancers at 15-kb resolution by sequential hybridization of readout oligos complementary to primary oligo probes

   May 21st, 2024 at 5:52pm

Details

experiment_type 
DNA FISH
aliases 
  1. alistair-boettiger-lab:imaging_path_750_15kb
file_reference 
  1. 4DNFIZCK1ZLZ.bed.gz
  2. 4DNFITQGGAX8.fasta
  3. 4DNFI28X6NLC.csv
imaging_rounds 
1-188
labeled_probe 
imaging oligos
labels 
  1. Alexa Fluor 750
other_probes 
  1. oligo probe library
  2. readout oligo library
override_display_title 
ORCA labeling of 188 SEs imaged using Alexa 750
public_release 
June 5th, 2024
target 
  1. Rik1700012A03 mouse region
  2. Mkrn1 mouse region
  3. Mkrn1 mouse region
  4. Smarcad1 mouse region
  5. Gadd45a mouse region
  6. Zfp638 mouse region
  7. Slc6a6 mouse region
  8. Phc1 mouse region
  9. Dppa3 mouse region
  10. Nanog mouse region
  11. Slc2a3 mouse region
  12. Msh6 mouse region
  13. B4galt6 mouse region
  14. Cd9 mouse region
  15. Epb41l4a mouse region
  16. Gm6724 mouse region
  17. Pura mouse region
  18. Pura mouse region
  19. Ldhb mouse region
  20. C2cd5 mouse region
  21. Ndfip1 mouse region
  22. Spry4 mouse region
  23. Spry4 mouse region
  24. Kras mouse region
  25. Mir290a mouse region
  26. Kctd16 mouse region
  27. Ube2s mouse region
  28. Arl14epl mouse region
  29. Mir145a mouse region
  30. Zfp532 mouse region
  31. Smad7 mouse region
  32. Smad7 mouse region
  33. Smad7 mouse region
  34. Ctif mouse region
  35. Pias2 mouse region
  36. Rbfa mouse region
  37. Zfp236 mouse region
  38. Malat1 mouse region
  39. Neat1 mouse region
  40. Cemip2 mouse region
  41. Klf9 mouse region
  42. Klf9 mouse region
  43. Nphs1os mouse region
  44. Uri1 mouse region
  45. Dmrt1 mouse region
  46. Cep55 mouse region
  47. Scd2 mouse region
  48. Sfxn3 mouse region
  49. Mirt1 mouse region
  50. Glod5 mouse region
  51. Kis2 mouse region
  52. Hsd17b14 mouse region
  53. Nav2 mouse region
  54. Klf13 mouse region
  55. Abhd2 mouse region
  56. Zfp710 mouse region
  57. Idh2 mouse region
  58. Sema4b mouse region
  59. Mesd mouse region
  60. Tead1 mouse region
  61. Ctbp2 mouse region
  62. Utf1 mouse region
  63. Fgf4 mouse region
  64. Spaca7 mouse region
  65. Rbpms mouse region
  66. Trmt9b mouse region
  67. Dlc1 mouse region
  68. Zfp42 mouse region
  69. Klf2 mouse region
  70. Ier2 mouse region
  71. Gpt2 mouse region
  72. Sall1 mouse region
  73. Chd9 mouse region
  74. Hmg20a mouse region
  75. Stoml1 mouse region
  76. Dppa5a mouse region
  77. Lrrc2 mouse region
  78. Trim71 mouse region
  79. Rpl14 mouse region
  80. Trak1 mouse region
  81. Akap12 mouse region
  82. Ahi1 mouse region
  83. Sgk1 mouse region
  84. Sgk1 mouse region
  85. Dse mouse region
  86. Gtf3c6 mouse region
  87. Mir1929 mouse region
  88. Ddit4 mouse region
  89. Nodal mouse region
  90. Tet1 mouse region
  91. Reep3 mouse region
  92. Reep3 mouse region
  93. Reep3 mouse region
  94. Arid5b mouse region
  95. Derl3 mouse region
  96. Chchd10 mouse region
  97. Col18a1 mouse region
  98. Gpx4 mouse region
  99. Abtb3 mouse region
  100. Kif13b mouse region
  101. Dmtn mouse region
  102. Tsc22d1 mouse region
  103. Rik1700108F19 mouse region
  104. Klf5 mouse region
  105. Spry2 mouse region
  106. Spry2 mouse region
  107. Zic5 mouse region
  108. Retreg1 mouse region
  109. Pvt1 mouse region
  110. Ly6a mouse region
  111. Rbfox2 mouse region
  112. Atf4 mouse region
  113. Brd1 mouse region
  114. Amigo2 mouse region
  115. Ttc39b mouse region
  116. Rpap3 mouse region
  117. Tuba1a mouse region
  118. Ppp1r1a mouse region
  119. Kank4 mouse region
  120. Usp7 mouse region
  121. Slc2a1 mouse region
  122. Macf1 mouse region
  123. Ftl2-ps mouse region
  124. Dlgap3 mouse region
  125. Pum1 mouse region
  126. Pla2g10 mouse region
  127. Pum1 mouse region
  128. Eif2b5 mouse region
  129. Usp48 mouse region
  130. Etv5 mouse region
  131. Alpl mouse region
  132. Eif4a2 mouse region
  133. Camk2n1 mouse region
  134. Bcl6 mouse region
  135. Opa1 mouse region
  136. Hes1 mouse region
  137. Slc51a mouse region
  138. Morc1 mouse region
  139. Cggbp1 mouse region
  140. Jam2 mouse region
  141. Morc3 mouse region
  142. Epha2 mouse region
  143. Qki mouse region
  144. Zfp13 mouse region
  145. Dusp1 mouse region
  146. Itpr3 mouse region
  147. RikB330016D10 mouse region
  148. Tmem51os1 mouse region
  149. Kazn mouse region
  150. Rpl10a mouse region
  151. Trp53cor1 mouse region
  152. Agtrap mouse region
  153. Ski mouse region
  154. Pim1 mouse region
  155. Ski mouse region
  156. Sik1 mouse region
  157. Zfp414 mouse region
  158. Brd2 mouse region
  159. Pou5f1 mouse region
  160. H2-M5 mouse region
  161. Or2h2 mouse region
  162. Fam53a mouse region
  163. Rbpj mouse region
  164. Klf3 mouse region
  165. Super enhancer-118 Mir469 (mouse)
  166. Crisp1 mouse region
  167. Gm9104 mouse region
  168. Mymx mouse region
  169. Rpl7l1 mouse region
  170. Bicral mouse region
  171. Ccnd3 mouse region
  172. Hspb8 mouse region
  173. Kat2b mouse region
  174. Med13l mouse region
  175. Acsbg3 mouse region
  176. Ralbp1 mouse region
  177. Med13l mouse region
  178. Tbx3 mouse region
  179. Mtcl1 mouse region
  180. Tgif1 mouse region
  181. Tgif1 mouse region
  182. Tgif1 mouse region
  183. Tbx3 mouse region
  184. Rhof mouse region
  185. Cldn4 mouse region
  186. Tgif1 mouse region
  187. Thumpd2 mouse region
  188. Camkmt mouse region
type_labeled_probe 
DNA primer