ImagingPath
ORCA labeling of 188 SEs imaged using Alexa 647

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Sequential DNA FISH to detect 188 super enhancers at 15-kb resolution by sequential hybridization of readout oligos complementary to primary oligo probes

   May 21st, 2024 at 4:58pm

Details

experiment_type 
DNA FISH
aliases 
  1. alistair-boettiger-lab:imaging_path_647_15kb
file_reference 
  1. 4DNFIZCK1ZLZ.bed.gz
  2. 4DNFITQGGAX8.fasta
  3. 4DNFI28X6NLC.csv
imaging_rounds 
1-188
labeled_probe 
imaging oligos
labels 
  1. Alexa Fluor 647
other_probes 
  1. oligo probe library
  2. readout oligo library
override_display_title 
ORCA labeling of 188 SEs imaged using Alexa 647
public_release 
June 5th, 2024
target 
  1. Prdm14 mouse region
  2. Dst mouse region
  3. Hs6st1 mouse region
  4. Hs6st1 mouse region
  5. Ubtf mouse region
  6. Tmem131 mouse region
  7. Mapt mouse region
  8. Pitpnc1 mouse region
  9. Slc39a11 mouse region
  10. Ino80d mouse region
  11. Llgl2 mouse region
  12. Snhg20 mouse region
  13. Socs3 mouse region
  14. Bahcc1 mouse region
  15. Notum mouse region
  16. Mreg mouse region
  17. Igfbp2 mouse region
  18. Ctdsp1 mouse region
  19. Ubxn2a mouse region
  20. Mycn mouse region
  21. Mycn mouse region
  22. Mycn mouse region
  23. Lpin1 mouse region
  24. Gm7550 mouse region
  25. Ttll4 mouse region
  26. Epha4 mouse region
  27. Eapp mouse region
  28. Nfkbia mouse region
  29. Mbip mouse region
  30. Fbxo36 mouse region
  31. Ptma mouse region
  32. Ptma mouse region
  33. Eif4e2 mouse region
  34. Gbx2 mouse region
  35. Cops8 mouse region
  36. Tfcp2l1 mouse region
  37. Tfcp2l1 mouse region
  38. Gli2 mouse region
  39. Inhbb mouse region
  40. Inhbb mouse region
  41. Yod1 mouse region
  42. Eif2d mouse region
  43. Rab29 mouse region
  44. Nucks1 mouse region
  45. Tmcc2 mouse region
  46. Rbbp5 mouse region
  47. Gpr37l1 mouse region
  48. Zfp281 mouse region
  49. Nr5a2 mouse region
  50. Lamc2 mouse region
  51. Gpa33 mouse region
  52. Uck2 mouse region
  53. Alyref2 mouse region
  54. Akt3 mouse region
  55. Lefty2 mouse region
  56. Lefty1 mouse region
  57. Enah mouse region
  58. Slc30a1 mouse region
  59. Gm17762 mouse region
  60. Etl4 mouse region
  61. Rik1700001O22 mouse region
  62. Fnbp1 mouse region
  63. Gpr107 mouse region
  64. Prrc2b mouse region
  65. Zbtb34 mouse region
  66. Tanc1 mouse region
  67. Gca mouse region
  68. Slc25a12 mouse region
  69. Platr26 mouse region
  70. Platr26 mouse region
  71. Slc52a3 mouse region
  72. Tcf15 mouse region
  73. Id1 mouse region
  74. Cbfa2t2 mouse region
  75. Eif2s2 mouse region
  76. Ift52 mouse region
  77. Mybl2 mouse region
  78. Ncoa3 mouse region
  79. Sulf2 mouse region
  80. B4galt5 mouse region
  81. Sall4 mouse region
  82. Sall4 mouse region
  83. Zfp217 mouse region
  84. Tfap2c mouse region
  85. Lama5 mouse region
  86. Dido1 mouse region
  87. Tpd52 mouse region
  88. Zfp704 mouse region
  89. Rik4930429B21 mouse region
  90. Fancm mouse region
  91. Sox2 mouse region
  92. Esrrb mouse region
  93. Sox2 mouse region
  94. Esrrb mouse region
  95. Tiparp mouse region
  96. Smg5 mouse region
  97. Irf2bpl mouse region
  98. Irf2bpl mouse region
  99. Ssr2 mouse region
  100. She mouse region
  101. Ahsa1 mouse region
  102. Itpk1 mouse region
  103. Mcl1 mouse region
  104. Ppp2r5c mouse region
  105. H2ac18 mouse region
  106. H2ac18 mouse region
  107. Ppp2r5c mouse region
  108. Ppp2r5c mouse region
  109. Txnip mouse region
  110. Hsp90aa1 mouse region
  111. H3c10 mouse region
  112. H2ac22 mouse region
  113. H4c9 mouse region
  114. Polr3gl mouse region
  115. Derl3 mouse region
  116. Chchd10 mouse region
  117. H2ac10 mouse region
  118. H4c6 mouse region
  119. Ankrd35 mouse region
  120. H2bc7 mouse region
  121. H3c3 mouse region
  122. H3c1 mouse region
  123. Jarid2 mouse region
  124. Nsd1 mouse region
  125. Ptgfrn mouse region
  126. Hsd17b3 mouse region
  127. F2rl1 mouse region
  128. Enc1 mouse region
  129. Enc1 mouse region
  130. Mir1904 mouse region
  131. Vangl1 mouse region
  132. Usp54 mouse region
  133. Kat6b mouse region
  134. Bcas2 mouse region
  135. Cnn3 mouse region
  136. Sncg mouse region
  137. Atg14 mouse region
  138. Elovl6 mouse region
  139. Pawr mouse region
  140. Otx2 mouse region
  141. Tmem253 mouse region
  142. Zfhx2 mouse region
  143. Tet2 mouse region
  144. Manba mouse region
  145. Mtfp1 mouse region
  146. Trim13 mouse region
  147. Tns3 mouse region
  148. Tdh mouse region
  149. Tns3 mouse region
  150. Upp1 mouse region
  151. Plekhf2 mouse region
  152. Zfp462 mouse region
  153. Klf4 mouse region
  154. Nfib mouse region
  155. Cobl mouse region
  156. Tmem17 mouse region
  157. Fam161a mouse region
  158. Ranbp17 mouse region
  159. Adam19 mouse region
  160. Vdac1 mouse region
  161. P4ha2 mouse region
  162. Tnip1 mouse region
  163. Ncor1 mouse region
  164. Pigl mouse region
  165. Cenpv mouse region
  166. Pirt mouse region
  167. Pirt mouse region
  168. Tmem220 mouse region
  169. Tmem220 mouse region
  170. Kdm6b mouse region
  171. Trp53 mouse region
  172. Tnfsfm13 mouse region
  173. Nxn mouse region
  174. Pipox mouse region
  175. Phf12 mouse region
  176. Rab11fip4 mouse region
  177. Tex14 mouse region
  178. Tex14 mouse region
  179. Msi2 mouse region
  180. Msi2 mouse region
  181. Elobl mouse region
  182. Igf2bp1 mouse region
  183. Ttll6 mouse region
  184. Epop mouse region
  185. Mllt6 mouse region
  186. Rara mouse region
  187. Rdm1 mouse region
  188. Arl4d mouse region
type_labeled_probe 
DNA primer