ImagingPath
28 consecutive 30-kb loci on chrX (open chromatin) targeted by oligo probe library (with Alexa Fluor 647-labeled imaging oligos)

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Sequential DNA FISH of 14 loci in the Alexa Fluor 647 channel. Together with the ATTO 565 channel, a total of 28 consecutive loci at 30-kb resolution in an open chromatin region of chrX (chrX:100920000-101760000, GRCh38) is imaged by sequential hybridization of fluorophore-conjugated imaging oligos complementary to primary oligo probes.

   August 3rd, 2022 at 10:59am

Details

experiment_type 
DNA FISH
aliases 
  1. siyuan-wang-lab:path_open_library_readout_AF647
file_reference 
  1. 4DNFIFB7ZQZM.bed.gz
  2. 4DNFI8DN1VML.zip
imaging_rounds 
1-14
labeled_probe 
imaging oligos
labels 
  1. Alexa Fluor 647
other_probes 
  1. oligo probe library
public_release 
August 8th, 2022
target 
  1. 28 consecutive 30-kb loci on chrX (open chromatin)
type_labeled_probe 
DNA primer