FileReference

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

File4DNFIZQZ39L9
released
View JSON

This tar-gzipped file includes the bwa index for the human genome build GRCh38. We use the UCSC hg38 version of the genome, corresponsing to GRCh38/GCA_000001405.15 including the 25 assembled chromosomes (1-22, X, Y, M), the 127 unplaced contigs, the 42 unlocalized contigs, but excluding the 261 alternative haplotypes. The assembly also includes the Epstein-Barr virus (EBV) genome. This is the same reference as used by the ENCODE Consortium for data processing: https://www.encodeproject.org/data-standards/reference-sequences/ .

   May 26th, 2017 at 3:56pm

Properties  

File Format 
bwaIndex
File Type 
Genome Index
General Classification 
Ancillary File
File Size 
3.21 GB
  Download

More Information