FileProcessed

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

File4DNFIOYWX3H9
released
View JSON

This is an output file of the Hi-C processing pipeline

   November 5th, 2019 at 1:01am

Properties  

File Format 
bam
File Type 
Alignments
General Classification 
Processed File
File Size 
32.47 GB
  Download

More Information

Quality Metric Summary 
Total Reads
383.97m
Unmapped Reads
4.782%
Multimapped Reads
16.736%
Duplicate Reads
17.147%
Walks
0.008%
Minor Contigs
0.021%

1 Experiment Set

Title
Set Type
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
4DNESAGG7EUC
Replicate
Micro-C
WTC-11 AAVS1-GFP C6
Hi-C and Micro-C on WTC-11 derived iPS cells
Micro-C experiments - clone 6
Enzyme
MNase
Job Dekker, UMMS

Micro-C from WTC derived iPS cells, for comparison with Hi-C experiments.

Lab:
Job Dekker, UMMS
Publication:
None

16 Raw Files

22 Processed Files

- fin -