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File4DNFIH1VFOLS
released
View JSON

This is an output file of the Hi-C processing pipeline

   August 25th, 2020 at 7:01pm

Properties  

File Format 
pairs
File Type 
Contact List-replicate
General Classification 
Processed File
File Size 
882.49 MB
  Download

More Information

Quality Metric Summary 
Filtered Reads
47.43m
Cis reads (>20kb)
56.407%
Short cis reads
33.448%
Trans Reads
10.144%

1 Experiment Set

Title
Set Type
Experiment Type
Biosample
Dataset
Condition
Assay Details
Lab
4DNESQTFP2CM
Replicate
PLAC-seq
F123-CASTx129 with Sox2 tags and RMCE site downstream of Sox2 SE
H3K4me3 PLAC-seq on on Sox2 tagged F123 ES cells
4CBS Downstream Control - 4 CTCF binding site region after Sox2 and SE
Target
H3K4me3
Bing Ren, UCSD

Replicates of H3K4me3 PLAC-seq on Sox2 tagged F123 ES cells wih 4 CTCF binding sites introduced downstream of both Sox2 and its Super Enhancer - Control

Lab:
Bing Ren, UCSD
Publication:
Huang H et al. (2021) PMID:34002095

4 Raw Files

7 Processed Files

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