FileFormat cool

released

Cooler files are another way to represent the matrix of contact frequencies generated by Hi-C data analysis and can be generated by the software package cooler. Cooler files can also be generated from hic files using the package hic2cool. Cool format is based on hdf5 and contains a sparse matrix of contact frequencies, at a single resolution.

   September 18th, 2018 at 2:52am

Details


file_format 
cool
assay_types 
  1. Hi-C
file_content 
contact matrix
standard_file_extension 
cool
url 
https://cooler.readthedocs.io/en/latest/schema.html
valid_item_types 
  1. FileProcessed