ExperimentHiC in situ Hi-C on cerebellar granule neuron - 14 days old with MboI

in situ Hi-C4DNEXQYBG6RE
released
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   February 27th, 2024 at 5:25pm

Properties  

Experiment Type 
in situ Hi-C
Follows SOP 
No
Biosample 
4DNBSC28IMRC
Digestion Enzyme 
MboI
Biosample Modifications 
Crispr disruption for Etv1 mouse gene
Biosample Treatments 
None
Biosample Biosource 
cerebellar granule neuron - 14 days old - 4DNSRS6WB4HD

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXQYBG6RE
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
4DNFIEQJJOEE
alignments (bam)
24.89 GB
File
4DNFI7O1SUEP
contact list-replicate (pairs)
2.09 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQYBG6RE
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Alignments (bam)
4DNFIEQJJOEE
360.9m
22.518%
24.709%
24.667%
0.0%
0.033%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
Experiment
4DNEXQYBG6RE
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFI7O1SUEP
101.43m
61.58%
11.471%
26.949%