ExperimentHiC in situ Hi-C on cerebellar granule neuron - 14 days old with MboI

in situ Hi-C4DNEXKVH29HG
released
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   February 27th, 2024 at 5:25pm

Properties  

Experiment Type 
in situ Hi-C
Follows SOP 
No
Biosample 
4DNBSRJXCWDN
Digestion Enzyme 
MboI
Biosample Modifications 
Crispr disruption for Etv1 mouse gene
Biosample Treatments 
None
Biosample Biosource 
cerebellar granule neuron - 14 days old - 4DNSRS6WB4HD

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXKVH29HG
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
4DNFIPCZ49OT
alignments (bam)
19.91 GB
File
4DNFI3IN2CWS
contact list-replicate (pairs)
2.2 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXKVH29HG
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Alignments (bam)
4DNFIPCZ49OT
250.63m
23.361%
25.044%
8.671%
0.0%
0.05%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
Experiment
4DNEXKVH29HG
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFI3IN2CWS
107.58m
63.182%
12.27%
24.547%