ExperimentHiC in situ Hi-C on cerebellar granule neuron - 14 days old with MboI

in situ Hi-C4DNEXBMSMUF4
released
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   February 27th, 2024 at 5:25pm

Properties  

Experiment Type 
in situ Hi-C
Follows SOP 
No
Biosample 
4DNBSZNRXFXC
Digestion Enzyme 
MboI
Biosample Modifications 
Crispr disruption for Etv1 mouse gene
Biosample Treatments 
None
Biosample Biosource 
cerebellar granule neuron - 14 days old - 4DNSRS6WB4HD

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXBMSMUF4
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
4DNFIUTSAO7W
alignments (bam)
21.02 GB
File
4DNFIFZ6FWA2
contact list-replicate (pairs)
2.28 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXBMSMUF4
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Alignments (bam)
4DNFIUTSAO7W
274.53m
22.413%
24.832%
12.247%
0.0%
0.05%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
Experiment
4DNEXBMSMUF4
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIFZ6FWA2
111.2m
61.679%
12.362%
25.96%