ExperimentHiC in situ Hi-C on cerebellar granule neuron - 14 days old with MboI

in situ Hi-C4DNEX5ROW4N9
released
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   February 27th, 2024 at 5:23pm

Properties  

Experiment Type 
in situ Hi-C
Follows SOP 
No
Biosample 
4DNBS3N2SRLA
Digestion Enzyme 
MboI
Biosample Modifications 
Crispr disruption for Rgs6 mouse gene
Biosample Treatments 
None
Biosample Biosource 
cerebellar granule neuron - 14 days old - 4DNSRS6WB4HD

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX5ROW4N9
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
4DNFI2BMQKO9
alignments (bam)
23.52 GB
File
4DNFIWJKYSF5
contact list-replicate (pairs)
1.86 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX5ROW4N9
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Alignments (bam)
4DNFI2BMQKO9
350.03m
23.587%
24.649%
25.901%
0.0%
0.029%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Details
Experiment
4DNEX5ROW4N9
in situ Hi-C on cerebellar granule neuron - 14 days old with MboI
File
Contact List-replicate (pairs)
4DNFIWJKYSF5
90.53m
63.562%
12.462%
23.976%