Experiment Set

4DNESNGZM5FG
released
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16 fraction Repliseq and G1 fraction on HCT116 Tier 2 cells

   March 10th, 2021 at 12:07am
Source Publication
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, et al., Nature 2022

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 (Tier 2)
Experiment Type(s) 
Multi-stage Repli-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
  1. Fraction: G1 of 17 fractions
  2. Fraction: P2 of 17 fractions
  3. Fraction: P3 of 17 fractions
  4. Fraction: P4 of 17 fractions
  5. Fraction: P5 of 17 fractions
  6. Fraction: P6 of 17 fractions
  7. Fraction: P7 of 17 fractions
  8. Fraction: P8 of 17 fractions
  9. Fraction: P9 of 17 fractions
  10. Fraction: P10 of 17 fractions
  11. Fraction: P11 of 17 fractions
  12. Fraction: P12 of 17 fractions
  13. Fraction: P13 of 17 fractions
  14. Fraction: P14 of 17 fractions
  15. Fraction: P15 of 17 fractions
  16. Fraction: P16 of 17 fractions
  17. Fraction: P17 of 17 fractions

34 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEX8Y2G2E1
Multi-stage Repli-seq on HCT116 (Tier 2) G1-phase G1
File
4DNFIQLLBSE5
alignments (bam)
1.33 GB
File
4DNFI7NVYDJT
normalized counts (bg)
3.65 MB
Experiment
4DNEXSH4SHEV
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P2
File
4DNFICJ2DFS3
alignments (bam)
972.75 MB
File
4DNFIR6ZS4LY
normalized counts (bg)
3.6 MB
Experiment
4DNEXKW3W45U
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P3
File
4DNFI95OMSYE
alignments (bam)
1.23 GB
File
4DNFID2WWTSC
normalized counts (bg)
3.69 MB
Experiment
4DNEX8XUCVYD
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P4
File
4DNFIF5LELT9
alignments (bam)
1.34 GB
File
4DNFIH4B6I1S
normalized counts (bg)
3.74 MB
Experiment
4DNEXHYNKS22
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P5
File
4DNFI7698ONI
alignments (bam)
1.35 GB
File
4DNFIFBWQ3QC
normalized counts (bg)
3.75 MB
Experiment
4DNEXDYOI8L6
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P6
File
4DNFIDHJ2814
alignments (bam)
1.3 GB
File
4DNFI6FRVLDB
normalized counts (bg)
3.75 MB
Experiment
4DNEXPLAL4TW
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P7
File
4DNFI6UL4ZTB
alignments (bam)
1.65 GB
File
4DNFINSRFNDX
normalized counts (bg)
3.82 MB
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Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEX8Y2G2E1
Multi-stage Repli-seq on HCT116 (Tier 2) G1-phase G1
File
Alignments (bam)
4DNFIQLLBSE5
28.44m
2.464%
Experiment
4DNEXSH4SHEV
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P2
File
Alignments (bam)
4DNFICJ2DFS3
20.18m
3.431%
Experiment
4DNEXKW3W45U
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P3
File
Alignments (bam)
4DNFI95OMSYE
26.4m
3.255%
Experiment
4DNEX8XUCVYD
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P4
File
Alignments (bam)
4DNFIF5LELT9
28.86m
3.121%
Experiment
4DNEXHYNKS22
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P5
File
Alignments (bam)
4DNFI7698ONI
29.13m
3.293%
Experiment
4DNEXDYOI8L6
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P6
File
Alignments (bam)
4DNFIDHJ2814
27.94m
3.053%
Experiment
4DNEXPLAL4TW
Multi-stage Repli-seq on HCT116 (Tier 2) S-phase P7
File
Alignments (bam)
4DNFI6UL4ZTB
36.22m
3.245%
Show 10 More