Experiment Set

4DNESGSBH4HA
released

Early and Late 2 phase Repliseq on YY1 knockdown v6.5 mESCs

   November 15th, 2019 at 6:56pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Custom
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Fraction: late of 2 fractions

8 Processed Files

Experiment
File
File Type
File Size
alignments (bam)
1.85 GB
normalized counts (bg)
3.48 MB
alignments (bam)
1.01 GB
normalized counts (bg)
3.36 MB
alignments (bam)
1.29 GB
normalized counts (bg)
3.35 MB
alignments (bam)
803.43 MB
normalized counts (bg)
3.33 MB

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
File
Alignments (bam)
4DNFIZVQXTBI
44.94m
12.035%
File
Alignments (bam)
4DNFI83PFYBS
35.99m
13.151%
File
Alignments (bam)
4DNFI3FSBBMK
28.54m
0.0%
File
Alignments (bam)
4DNFIWUCB8EM
27.07m
14.04%