Experiment Set

4DNESEJCRVNR
released

Early and Late 2 phase Repliseq on H1-hESC Tier 1 cells; NOTE that additional fastq files have been added to the Bioreplicate 2 experiments in this Dataset on Jan. 15, 2018 to increase the number of reads in those experiments.

   August 15th, 2017 at 10:56pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Custom
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
  1. Fraction: late fraction of 2 fractions
  2. Fraction: early fraction of 2 fractions

12 Processed Files

Experiment
File
File Type
File Size
alignments (bam)
96.4 MB
normalized counts (bg)
3.07 MB
alignments (bam)
362.97 MB
normalized counts (bg)
3.39 MB
alignments (bam)
169.61 MB
normalized counts (bg)
3.2 MB
alignments (bam)
572.87 MB
normalized counts (bg)
3.51 MB
alignments (bam)
678.91 MB
normalized counts (bg)
3.55 MB
alignments (bam)
582.59 MB
normalized counts (bg)
3.52 MB

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
File
Alignments (bam)
4DNFIMOR9IMU
1.77m
1.589%
File
Alignments (bam)
4DNFI5WUPVXK
7.21m
1.553%
File
Alignments (bam)
4DNFIRSSCVBK
3.12m
1.576%
File
Alignments (bam)
4DNFIJPG54N2
11.47m
1.447%
File
Alignments (bam)
4DNFIMYCZPSM
13.72m
1.5%
File
Alignments (bam)
4DNFIX4MY59B
11.78m
1.576%