Experiment Set

4DNESBAXKT3F
released
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16 fraction Repliseq and G1 fraction on F121-9 -mouse ESC Tier 2 cells

   September 5th, 2024 at 11:03pm

Data Usage Guidelines  

Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.

Experiment Set Properties  

Set Type 
Custom
Organism 
M. musculus
Sample Type 
stem cells
Sample 
F121-9-CASTx129 (Tier 2)
Experiment Type(s) 
Multi-stage Repli-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
  1. Fraction: P5 of 16 fractions
  2. Fraction: P6 of 16 fractions
  3. Fraction: P7 of 16 fractions
  4. Fraction: P8 of 16 fractions
  5. Fraction: P9 of 16 fractions
  6. Fraction: P10 of 16 fractions
  7. Fraction: P11 of 16 fractions
  8. Fraction: P12 of 16 fractions
  9. Fraction: P13 of 16 fractions
  10. Fraction: P14 of 16 fractions
  11. Fraction: P15 of 16 fractions
  12. Fraction: P16 of 16 fractions
  13. Fraction: P17 of 16 fractions
  14. Fraction: P4 of 16 fractions
  15. Fraction: P3 of 16 fractions
  16. Fraction: P2 of 16 fractions
  17. Fraction: G1 of 16 fractions

52 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESBAXKT3F
Multiple Experiments
File
4DNFI53E1A38
initiation zones (bed)
13.47 kB
Experiment
4DNEXQ4V5ARL
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P5
File
4DNFI6TELB6O
alignments (bam)
2.81 GB
File
4DNFIDPX8POD
normalized counts (bg)
3.67 MB
File
4DNFITKN6R2V
counts (bg)
3.15 MB
Experiment
4DNEXOTAW4BI
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P6
File
4DNFIBJW9XFD
alignments (bam)
3.03 GB
File
4DNFI9Q7655Y
normalized counts (bg)
3.69 MB
File
4DNFIO6VTAQC
counts (bg)
3.19 MB
Experiment
4DNEX9XSATEF
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P7
File
4DNFISQPWN2H
alignments (bam)
2.98 GB
File
4DNFI2VKGQMM
normalized counts (bg)
3.7 MB
File
4DNFI57HXJSO
counts (bg)
3.18 MB
Experiment
4DNEX6FRDZU7
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P8
File
4DNFI4RVX8AL
alignments (bam)
2.84 GB
File
4DNFIBEGIFWM
normalized counts (bg)
3.69 MB
File
4DNFII7DWU12
counts (bg)
3.17 MB
Experiment
4DNEXMBH6FRC
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P9
File
4DNFI5HUVU4E
alignments (bam)
2.96 GB
File
4DNFI7EZ8LGA
normalized counts (bg)
3.69 MB
File
4DNFIHMDA6UF
counts (bg)
3.19 MB
Experiment
4DNEXROZ8TUD
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P10
File
4DNFIZLT1WJA
alignments (bam)
2.74 GB
File
4DNFIOW22ECT
normalized counts (bg)
3.67 MB
File
4DNFIWR1EFC8
counts (bg)
3.18 MB
Show 11 More

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXQ4V5ARL
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P5
File
Alignments (bam)
4DNFI6TELB6O
148.93m
0.0%
Experiment
4DNEXOTAW4BI
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P6
File
Alignments (bam)
4DNFIBJW9XFD
162.1m
0.0%
Experiment
4DNEX9XSATEF
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P7
File
Alignments (bam)
4DNFISQPWN2H
158.04m
0.0%
Experiment
4DNEX6FRDZU7
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P8
File
Alignments (bam)
4DNFI4RVX8AL
148.22m
0.0%
Experiment
4DNEXMBH6FRC
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P9
File
Alignments (bam)
4DNFI5HUVU4E
154.13m
0.0%
Experiment
4DNEXROZ8TUD
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P10
File
Alignments (bam)
4DNFIZLT1WJA
144.12m
0.0%
Experiment
4DNEX28EC6MN
Multi-stage Repli-seq on F121-9-CASTx129 (Tier 2) S-phase P11
File
Alignments (bam)
4DNFIITK7LJH
163.26m
0.0%
Show 10 More