Experiment Set

4DNESB7XYI9V
released
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sci-Hi-C experiments on F121-6, F123 or ES_Tsix-stop mESC cells differentiated to embryoid body (time-course)

   September 3rd, 2021 at 12:24pm
Source Publication
Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation.
Bonora G, Ramani V, et al., Genome biology 2021

Assay Description  

Experiment Set Properties  

Set Type 
Custom
Organism 
M. musculus
Sample Type 
  1. in vitro differentiated cells
  2. stem cells
Sample 
  1. ES_Tsix-stop differentiated to embryoid body
  2. ES_Tsix-stop
  3. F123-CASTx129 differentiated to embryoid body
  4. F123-CASTx129
  5. F121-6-CASTx129 differentiated to embryoid body
  6. F121-6-CASTx129
  7. ES_Tsix-stop differentiated to neuronal stem cell
  8. F123-CASTx129 differentiated to neuronal stem cell
  9. F121-6-CASTx129 differentiated to neuronal stem cell
Experiment Type(s) 
sci-Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

32 Raw Files

Biosample
Experiment
File
File Size
Sequence Length
Overall Quality
Total Sequences
Notes
Biosample
4DNBSREAXXIJ
ES_Tsix-stop differentiated to embryoid body
Experiment
4DNEXOA4DNR8
sci-Hi-C
Pair 1
File
4DNFI73PQTDK
3.69 GB
250
  Pass
18.95m
File
4DNFIRORO5WG
3.86 GB
250
  Pass
18.95m
Pair 2
File
4DNFITQI53NJ
14.53 GB
250
  Pass
94.27m
File
4DNFINKTBIIT
14.92 GB
250
  Pass
94.27m
Biosample
4DNBSJENSV4X
ES_Tsix-stop differentiated to embryoid body
Experiment
4DNEXCDN76F9
sci-Hi-C
Pair 1
File
4DNFIJF36OMY
4.05 GB
250
  Pass
20.8m
File
4DNFIXJAN19R
4.29 GB
250
  Pass
20.8m
Pair 2
File
4DNFIF5GZWBL
15.86 GB
250
  Pass
102.89m
File
4DNFIN22FPO9
16.34 GB
250
  Pass
102.89m
Biosample
4DNBSFE7GGZG
ES_Tsix-stop
Experiment
4DNEXJ33QCZU
sci-Hi-C
Pair 1
File
4DNFIJF36OMY
4.05 GB
250
  Pass
20.8m
File
4DNFIXJAN19R
4.29 GB
250
  Pass
20.8m
Pair 2
File
4DNFIF5GZWBL
15.86 GB
250
  Pass
102.89m
File
4DNFIN22FPO9
16.34 GB
250
  Pass
102.89m
Show 20 More Biosamples with 20 Experiments