Experiment Set

4DNES92AU9JR
released
View JSON

16 fraction Repliseq on HCT116 Rad21 KD cells

   March 10th, 2021 at 12:07am
Source Publication
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, et al., Nature 2022

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 with Crispr generated mClover and AID-tagged RAD21
Experiment Type(s) 
Multi-stage Repli-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
  1. Fraction: P2 of 16 fractions
  2. Fraction: P3 of 16 fractions
  3. Fraction: P4 of 16 fractions
  4. Fraction: P5 of 16 fractions
  5. Fraction: P6 of 16 fractions
  6. Fraction: P7 of 16 fractions
  7. Fraction: P8 of 16 fractions
  8. Fraction: P9 of 16 fractions
  9. Fraction: P10 of 16 fractions
  10. Fraction: P11 of 16 fractions
  11. Fraction: P12 of 16 fractions
  12. Fraction: P13 of 16 fractions
  13. Fraction: P14 of 16 fractions
  14. Fraction: P15 of 16 fractions
  15. Fraction: P16 of 16 fractions
  16. Fraction: P17 of 16 fractions

32 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXXULAE8E
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P2
File
4DNFIC6ND1BU
alignments (bam)
1.91 GB
File
4DNFIXFHUPTI
normalized counts (bg)
3.98 MB
Experiment
4DNEX6CP3AI2
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P3
File
4DNFIRQPN4BC
alignments (bam)
2.15 GB
File
4DNFIX6NTFM4
normalized counts (bg)
3.94 MB
Experiment
4DNEX9DPIWJ1
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P4
File
4DNFIAG6W3AN
alignments (bam)
1.89 GB
File
4DNFISBPS2ZV
normalized counts (bg)
3.93 MB
Experiment
4DNEXW968K3U
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P5
File
4DNFIJ1FLR2M
alignments (bam)
1.97 GB
File
4DNFIMMM331D
normalized counts (bg)
3.96 MB
Experiment
4DNEXFMRQ7MN
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P6
File
4DNFI1SW83FS
alignments (bam)
1.83 GB
File
4DNFIPSBAONE
normalized counts (bg)
3.92 MB
Experiment
4DNEX9ZMIEJL
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P7
File
4DNFIVWLABGH
alignments (bam)
1.95 GB
File
4DNFIKESZXXD
normalized counts (bg)
4 MB
Experiment
4DNEX9534ZNB
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P8
File
4DNFIMMZJ2PF
alignments (bam)
2.11 GB
File
4DNFIZT1GRIL
normalized counts (bg)
3.97 MB
Show 9 More

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXXULAE8E
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P2
File
Alignments (bam)
4DNFIC6ND1BU
89.38m
0.0%
Experiment
4DNEX6CP3AI2
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P3
File
Alignments (bam)
4DNFIRQPN4BC
99.39m
0.0%
Experiment
4DNEX9DPIWJ1
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P4
File
Alignments (bam)
4DNFIAG6W3AN
94.26m
0.0%
Experiment
4DNEXW968K3U
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P5
File
Alignments (bam)
4DNFIJ1FLR2M
104.2m
0.0%
Experiment
4DNEXFMRQ7MN
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P6
File
Alignments (bam)
4DNFI1SW83FS
84.84m
0.0%
Experiment
4DNEX9ZMIEJL
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P7
File
Alignments (bam)
4DNFIVWLABGH
95.97m
0.0%
Experiment
4DNEX9534ZNB
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged RAD21 S-phase P8
File
Alignments (bam)
4DNFIMMZJ2PF
97.78m
0.0%
Show 9 More