Experiment Set

4DNES72NE7SL
released
View JSON

16 fraction Repliseq on HCT116 WAPL KD cells

   September 10th, 2021 at 11:58pm
Source Publication
Cohesin-mediated loop anchors confine the locations of human replication origins.
Emerson DJ, Zhao PA, et al., Nature 2022

Experiment Set Properties  

Set Type 
Custom
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G)
Experiment Type(s) 
Multi-stage Repli-seq
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
  1. Fraction: P17 of 16 fractions
  2. Fraction: P16 of 16 fractions
  3. Fraction: P15 of 16 fractions
  4. Fraction: P14 of 16 fractions
  5. Fraction: P13 of 16 fractions
  6. Fraction: P12 of 16 fractions
  7. Fraction: P11 of 16 fractions
  8. Fraction: P10 of 16 fractions
  9. Fraction: P9 of 16 fractions
  10. Fraction: P8 of 16 fractions
  11. Fraction: P7 of 16 fractions
  12. Fraction: P6 of 16 fractions
  13. Fraction: P5 of 16 fractions
  14. Fraction: P4 of 16 fractions
  15. Fraction: P3 of 16 fractions
  16. Fraction: P2 of 16 fractions

32 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXILVYXZJ
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P17
File
4DNFICPQQH5O
alignments (bam)
1.09 GB
File
4DNFIFGRAO9S
normalized counts (bg)
3.66 MB
Experiment
4DNEXGEQ5BKK
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P16
File
4DNFIC2QQICS
alignments (bam)
782.4 MB
File
4DNFIXYVGJFJ
normalized counts (bg)
3.65 MB
Experiment
4DNEXZNF33LO
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P15
File
4DNFIPASNE3M
alignments (bam)
1.24 GB
File
4DNFIMK94MBW
normalized counts (bg)
3.7 MB
Experiment
4DNEXUNAJQTW
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P14
File
4DNFIXPZ1Y1X
alignments (bam)
956.5 MB
File
4DNFIEOW82YJ
normalized counts (bg)
3.63 MB
Experiment
4DNEXQEAJP1A
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P13
File
4DNFI63ECD5S
alignments (bam)
1.28 GB
File
4DNFIJFFFFFB
normalized counts (bg)
3.66 MB
Experiment
4DNEXAWJ156Y
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P12
File
4DNFIRHBZ8J6
alignments (bam)
1021 MB
File
4DNFIO291VUI
normalized counts (bg)
3.64 MB
Experiment
4DNEXCZIRY97
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P11
File
4DNFIDCAJA5A
alignments (bam)
1.15 GB
File
4DNFIS387IIZ
normalized counts (bg)
3.62 MB
Show 9 More

Quality Metrics

Experiment
For File
Total Aligned
Removed Duplicates
Details
Experiment
4DNEXILVYXZJ
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P17
File
Alignments (bam)
4DNFICPQQH5O
30.54m
0.0%
Experiment
4DNEXGEQ5BKK
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P16
File
Alignments (bam)
4DNFIC2QQICS
27.47m
0.0%
Experiment
4DNEXZNF33LO
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P15
File
Alignments (bam)
4DNFIPASNE3M
34.06m
0.0%
Experiment
4DNEXUNAJQTW
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P14
File
Alignments (bam)
4DNFIXPZ1Y1X
28.7m
0.0%
Experiment
4DNEXQEAJP1A
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P13
File
Alignments (bam)
4DNFI63ECD5S
33.89m
0.0%
Experiment
4DNEXAWJ156Y
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P12
File
Alignments (bam)
4DNFIRHBZ8J6
28.75m
0.0%
Experiment
4DNEXCZIRY97
Multi-stage Repli-seq on HCT116 with Crispr generated mClover and AID-tagged WAPL, AAVS1-OsTIR1(F74G) S-phase P11
File
Alignments (bam)
4DNFIDCAJA5A
30.14m
0.0%
Show 9 More