ExperimentSetReplicate

ExperimentSet4DNESYTWHUH6
replaced
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MicroC Libraries from HFFc6 cells with 2 biological replicates, FA and DSG cross-linked, MNase digestion

   February 19th, 2019 at 3:46pm

Note: Replaced Item - 4DNESYTWHUH6  

This experiment set was replaced by 4DNESWST3UBH because new biological replicates were added.

Note: This Experiment Set Supersedes - 4DNESYTWHUH6  

This experiment set supercedes 4DNESCZJD9KK because new biological replicates were added.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFFc6 (Tier 1)
Experiment Type(s) 
Micro-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MNase

25 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESYTWHUH6
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIP5EUOFX
4.35 billion
19.94%
64.906%
15.154%
Experiment
4DNEXC1TYVLD
Bio Rep 1, Tec Rep 1
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFICOEXGPJ
499.96m
19.172%
74.271%
6.557%
Experiment
4DNEX1MDLILR
Bio Rep 1, Tec Rep 2
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIK8UIB5B
521.09m
19.403%
73.939%
6.658%
Experiment
4DNEXRJYVOZJ
Bio Rep 1, Tec Rep 3
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIYBTHGNA
496.69m
20.103%
74.055%
5.842%
Experiment
4DNEXONC5BJ1
Bio Rep 1, Tec Rep 4
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIJZDEIZ3
512.44m
19.489%
74.539%
5.972%
Experiment
4DNEX9TF73VI
Bio Rep 1, Tec Rep 5
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIN7IIIY6
502.97m
19.349%
73.91%
6.741%
Experiment
4DNEX5F27GL2
Bio Rep 1, Tec Rep 6
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIBHI5YI9
516.55m
19.524%
74.466%
6.011%
Experiment
4DNEXY8QQ4GB
Bio Rep 2, Tec Rep 1
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIKWV6BY2
161.72m
21.492%
36.337%
42.172%
Experiment
4DNEXRSGZNKF
Bio Rep 2, Tec Rep 2
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIZU6ADT1
157.71m
22.088%
35.432%
42.48%
Experiment
4DNEXOPPELT5
Bio Rep 2, Tec Rep 3
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIATCW955
343.65m
18.976%
49.315%
31.709%
Experiment
4DNEX541OVDK
Bio Rep 2, Tec Rep 4
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIK82YRNM
283.45m
22.055%
43.678%
34.268%
Experiment
4DNEXTQXJE3L
Bio Rep 2, Tec Rep 5
Micro-C on HFFc6 (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIF5F4HRG
350.77m
21.279%
42.974%
35.747%
Show 5 More
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXC1TYVLD
Bio Rep 1, Tec Rep 1
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFINB1CUQU
746.16m
3.502%
20.966%
8.522%
0.005%
0.072%
Experiment
4DNEX1MDLILR
Bio Rep 1, Tec Rep 2
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFINJ8BBBJ
743.86m
3.157%
20.913%
5.871%
0.007%
0.074%
Experiment
4DNEXRJYVOZJ
Bio Rep 1, Tec Rep 3
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFIHF468MZ
706.29m
3.245%
19.462%
6.966%
0.004%
0.075%
Experiment
4DNEXONC5BJ1
Bio Rep 1, Tec Rep 4
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFI44CAKN7
742.73m
3.53%
19.702%
7.768%
0.005%
0.075%
Experiment
4DNEX9TF73VI
Bio Rep 1, Tec Rep 5
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFIO9G2R18
735.11m
3.414%
20.267%
7.892%
0.006%
0.078%
Experiment
4DNEX5F27GL2
Bio Rep 1, Tec Rep 6
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFI1VMSHH3
729.68m
3.932%
19.998%
5.273%
0.006%
0.082%
Experiment
4DNEXY8QQ4GB
Bio Rep 2, Tec Rep 1
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFI67GP12Q
342.66m
16.328%
20.682%
15.791%
0.003%
0.13%
Experiment
4DNEXRSGZNKF
Bio Rep 2, Tec Rep 2
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFICZFSK5Q
352.68m
17.408%
20.301%
17.571%
0.003%
0.124%
Experiment
4DNEXOPPELT5
Bio Rep 2, Tec Rep 3
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFIEPXI6LM
728.25m
3.779%
20.462%
28.567%
0.004%
0.108%
Experiment
4DNEX541OVDK
Bio Rep 2, Tec Rep 4
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFITEDLO9U
723.01m
3.862%
21.337%
35.593%
0.004%
0.088%
Experiment
4DNEXTQXJE3L
Bio Rep 2, Tec Rep 5
Micro-C on HFFc6 (Tier 1) with MNase
File
Alignments (bam)
4DNFIVWM7FOH
739.98m
3.458%
21.097%
28.038%
0.004%
0.109%
Show 4 More