ExperimentSetReplicate

ExperimentSet4DNESRCFT5AI
replaced

MicroC Libraries from H1ESC cells, biological replicate 1, FA and DSG cross-linked, MNase digestion

   November 17th, 2017 at 8:53pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
stem cells
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MNase

8 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXQMEU2O4
Bio Rep 1, Tec Rep 1
Micro-C on H1-hESC (Tier 1) with MNase
alignments (bam)
67.1 GB
contact list-replicate (pairs)
8.69 GB
Experiment
4DNEX24VTARO
Bio Rep 1, Tec Rep 2
Micro-C on H1-hESC (Tier 1) with MNase
alignments (bam)
54.52 GB
contact list-replicate (pairs)
3.67 GB
Experiment
4DNEX9JAVMKE
Bio Rep 1, Tec Rep 3
Micro-C on H1-hESC (Tier 1) with MNase
alignments (bam)
58.8 GB
contact list-replicate (pairs)
5.42 GB
Experiment
4DNEXWHALJ1K
Bio Rep 1, Tec Rep 4
Micro-C on H1-hESC (Tier 1) with MNase
alignments (bam)
67.19 GB
contact list-replicate (pairs)
8.38 GB

Quality Metrics

Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXQMEU2O4
Bio Rep 1, Tec Rep 1
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFID87ZI1F
791.95m
4.987%
19.072%
13.194%
0.004%
0.077%
Experiment
4DNEX24VTARO
Bio Rep 1, Tec Rep 2
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFIW8TZAXU
746.64m
5.193%
19.915%
47.563%
0.006%
0.033%
Experiment
4DNEX9JAVMKE
Bio Rep 1, Tec Rep 3
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFISY5EYYP
716.33m
4.364%
21.99%
31.986%
0.009%
0.054%
Experiment
4DNEXWHALJ1K
Bio Rep 1, Tec Rep 4
Micro-C on H1-hESC (Tier 1) with MNase
File
Alignments (bam)
4DNFI47X94O6
802.37m
4.594%
20.022%
16.645%
0.004%
0.074%
Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
Experiment
4DNEXQMEU2O4
Bio Rep 1, Tec Rep 1
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFI8GM4EL9
496.89m
23.981%
66.035%
9.984%
Experiment
4DNEX24VTARO
Bio Rep 1, Tec Rep 2
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIMT4PHZ1
204m
24.243%
61.861%
13.896%
Experiment
4DNEX9JAVMKE
Bio Rep 1, Tec Rep 3
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFIBMG8YA3
298.36m
33.487%
49.581%
16.932%
Experiment
4DNEXWHALJ1K
Bio Rep 1, Tec Rep 4
Micro-C on H1-hESC (Tier 1) with MNase
File
Contact List-replicate (pairs)
4DNFING6ZFDF
471.27m
22.332%
59.216%
18.452%