ExperimentSetReplicate

ExperimentSet4DNESGZ9A3FG
replaced
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ATAC-seq on HFFc6 technical replicates - Replaced with a set with more replicates

   July 31st, 2017 at 3:30pm

Note: Replaced Item - 4DNESGZ9A3FG  

This experiment set was replaced by 4DNESMBA9T3L because a new biological replicate was added.

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFFc6 (Tier 1)
Experiment Type(s) 
ATAC-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

4 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXF6RQQ27
Bio Rep 1, Tec Rep 1
ATAC-seq on HFFc6 (Tier 1)
File
4DNFIZ114HJK
read positions (bed)
363.85 MB
Experiment
4DNEXQUCGLW9
Bio Rep 1, Tec Rep 2
ATAC-seq on HFFc6 (Tier 1)
File
4DNFIJC3CMMP
read positions (bed)
290.49 MB
Experiment
4DNEXJGIUGRH
Bio Rep 1, Tec Rep 3
ATAC-seq on HFFc6 (Tier 1)
File
4DNFINEISP8C
read positions (bed)
368.73 MB
Experiment
4DNEXBYHX8E4
Bio Rep 1, Tec Rep 4
ATAC-seq on HFFc6 (Tier 1)
File
4DNFISXAP8JT
read positions (bed)
243.41 MB

Quality Metrics

Experiment
For File
Percent mitochondrial reads
Nonredundant Read Fraction (NRF)
PCR Bottleneck Coefficient (PBC)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXF6RQQ27
Bio Rep 1, Tec Rep 1
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFIZ114HJK
60.52%
0.86
0.88
24.37m
Experiment
4DNEXQUCGLW9
Bio Rep 1, Tec Rep 2
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFIJC3CMMP
63.45%
0.87
0.89
19.76m
Experiment
4DNEXJGIUGRH
Bio Rep 1, Tec Rep 3
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFINEISP8C
61.1%
0.85
0.86
24.62m
Experiment
4DNEXBYHX8E4
Bio Rep 1, Tec Rep 4
ATAC-seq on HFFc6 (Tier 1)
File
Read Positions (bed)
4DNFISXAP8JT
55.81%
0.88
0.89
16.52m