ExperimentSetReplicate

ExperimentSet4DNESZXDGXL4
released
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Biological replicates of NIPBL ChIP-seq on TCF1 KO Scid.adh cells

   October 13th, 2022 at 3:38pm
Source Publication
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.
Wang W, Chandra A, et al., Nature immunology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
scid.adh
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: Nipbl mouse protein

5 Processed Files

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEX9DUDUC1
Bio Rep 1, Tec Rep 1
ChIP-seq against Nipbl mouse protein on scid.adh
File
Read Positions (bed)
4DNFIUHC3S93
0.98
0.98
19.45m
Experiment
4DNEXC2FP86T
Bio Rep 2, Tec Rep 1
ChIP-seq against Nipbl mouse protein on scid.adh
File
Read Positions (bed)
4DNFI39MFMTI
0.99
0.98
20.36m