ExperimentSetReplicate

ExperimentSet4DNESZW7OOTL
released

Replicates of Hi-C on H9 hESC cells, containing a MYL2-H2B-GFP marker for cardiocytes, at day 80 differentiation - ventricular cardiomyocytes.

   August 7th, 2019 at 5:53pm

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
stem cell derived cell line
Biosource 
H9 with targeted integration of GFP-tagged MYL2 differentiated to cardiac muscle cell
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESZW7OOTL
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI16FU2Y5
1.88 billion
56.075%
17.036%
26.89%
File
Contact List-replicate (pairs)
4DNFIUL5IXN7
975.65m
56.356%
17.268%
26.376%
File
Contact List-replicate (pairs)
4DNFIFQC43YQ
908.93m
55.772%
16.787%
27.441%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
File
Alignments (bam)
4DNFINOT3LDB
1.71 billion
8.093%
11.739%
18.021%
5.063%
0.111%
File
Alignments (bam)
4DNFIV13J32D
1.55 billion
8.007%
11.701%
16.466%
5.036%
0.115%