ExperimentSetReplicate

ExperimentSet4DNESZTHVFJ7
released
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input for TBX5 ChIP-seq on wild-type WTC-11 iPSC cells differentiated for 20 days to atrial cardiac myocytes - the pulldown was done using an engineered TAP-tagged TBX5 and pulldown of the biotinylated protein with Streptavidin beads.

   December 19th, 2024 at 8:23pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: None (Control)

6 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXJ1LM8V8
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIEG1SOIQ
read positions (bed)
812.83 MB
Experiment
4DNEXOW4TDUP
Bio Rep 2, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIKGDCNHV
read positions (bed)
966.08 MB
Experiment
4DNEXF4HTYTG
Bio Rep 3, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFINYFUGEY
read positions (bed)
1.12 GB
Experiment
4DNEX29NMT6L
Bio Rep 4, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIVDZRX6J
read positions (bed)
1.26 GB
Experiment
4DNEXXIA66BA
Bio Rep 5, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI8A2XPQS
read positions (bed)
793.79 MB
Experiment
4DNEXK7T4A4A
Bio Rep 6, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI9NBLZUZ
read positions (bed)
1.04 GB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXJ1LM8V8
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIEG1SOIQ
0.89
0.89
48.66m
Experiment
4DNEXOW4TDUP
Bio Rep 2, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIKGDCNHV
0.9
0.9
57.89m
Experiment
4DNEXF4HTYTG
Bio Rep 3, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFINYFUGEY
0.88
0.87
68.81m
Experiment
4DNEX29NMT6L
Bio Rep 4, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIVDZRX6J
0.9
0.9
77.09m
Experiment
4DNEXXIA66BA
Bio Rep 5, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFI8A2XPQS
0.88
0.88
47.52m
Experiment
4DNEXK7T4A4A
Bio Rep 6, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFI9NBLZUZ
0.88
0.87
63.59m