ExperimentSetReplicate

ExperimentSet4DNESZNSYMTQ
released
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in situ Hi-C on primary cardiomyocytes from the left ventricle - donor 01199

   April 20th, 2023 at 9:45am
Source Publication
Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
Bianchi V, Geeven G, et al., bioRxiv 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
tissue
Sample 
heart left ventricle
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESZNSYMTQ
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI8A5PRZC
1.06 billion
41.118%
24.63%
34.252%
Experiment
4DNEX8NDCV8U
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Contact List-replicate (pairs)
4DNFIF7Z91PQ
524.83m
40.98%
23.951%
35.069%
Experiment
4DNEXKZYC9DN
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Contact List-replicate (pairs)
4DNFIYVLYCML
533.31m
41.254%
25.298%
33.448%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESZNSYMTQ
Multiple Experiments
File
Contact Matrix (mcool)
4DNFISWHXA16
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX8NDCV8U
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Alignments (bam)
4DNFI8HM2NW4
965.22m
13.207%
20.422%
7.123%
4.874%
0.215%
Experiment
4DNEXKZYC9DN
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left ventricle with DpnII
File
Alignments (bam)
4DNFI4KWK2GU
998.51m
13.443%
20.416%
7.231%
5.499%
0.204%