ExperimentSetReplicate

ExperimentSet4DNESZNNP25B
released
View JSON

in situ Hi-C on synchronyzed HeLa cells - Replicate 1 - 2.75 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication
A chromosome folding intermediate at the condensin-to-cohesin transition during telophase.
Abramo K, Valton AL, et al., Nature cell biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa-S3
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESZNNP25B
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIMOVWF4V
57.89m
45.001%
20.009%
34.99%
Experiment
4DNEX7TURZ44
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIOZ8TUZQ
57.89m
45.001%
20.009%
34.99%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESZNNP25B
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIPXH7B8P
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX7TURZ44
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFI6LFJ3JU
115.62m
13.045%
24.195%
12.68%
0.007%
0.223%