ExperimentSetReplicate

ExperimentSet4DNESZKHN4WZ
released
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CTCF input on compound heterozygous Crispr modified TBX5 LOF with 1 bp insertion causing frameshift and 8 bp deletion in WTC-11 iPSC cells differentiated for 20 days to atrial cardiac myocytes.

   December 19th, 2024 at 8:23pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor
Grant ZL, Kuang S, et al., bioRxiv 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
ChIP-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Target: None (Control)

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXNBWAPGA
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIXLBH5ZX
read positions (bed)
1.15 GB
Experiment
4DNEX5NACH3P
Bio Rep 2, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIQAVUMSS
read positions (bed)
602.95 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Details
Experiment
4DNEXNBWAPGA
Bio Rep 1, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIXLBH5ZX
0.9
0.9
70.59m
Experiment
4DNEX5NACH3P
Bio Rep 2, Tec Rep 1
ChIP-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bed)
4DNFIQAVUMSS
0.5
0.54
36.07m