ExperimentSetReplicate

ExperimentSet4DNESZBRZSPP
released
View JSON

mRNA-seq on CH12 (CH12-CTCF-mZF9-11)

   November 27th, 2018 at 6:26pm
Source Publication
The Energetics and Physiological Impact of Cohesin Extrusion.
Vian L, Pekowska A, et al., Cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
CH12
Experiment Type(s) 
RNA-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

28 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXJQGOEMR
Bio Rep 1, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFIN7WOUDN
21.57m
14.71m
Experiment
4DNEXYE9L8QO
Bio Rep 2, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFIV8F1HAJ
21.35m
13.85m
Experiment
4DNEXSIMNZ2M
Bio Rep 3, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFI7RGB284
23.71m
16.06m
Experiment
4DNEX2XIVD4M
Bio Rep 4, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFIDXR9CFZ
21.23m
13.91m
Experiment
4DNEX68IX7HG
Bio Rep 5, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFIHHLTTHP
19.25m
12.79m
Experiment
4DNEX63QKCMT
Bio Rep 6, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFIAXJGFB1
22.23m
15.06m
Experiment
4DNEXE6VWXFX
Bio Rep 7, Tec Rep 1
RNA-seq on CH12
File
Read Positions (bam)
4DNFIBKF4ZGE
49.38m
38.74m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXJQGOEMR
Bio Rep 1, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFIFXEQR8H
16.08m
6.69k
Experiment
4DNEXYE9L8QO
Bio Rep 2, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFIAOJ24ZY
16.04m
5.16k
Experiment
4DNEXSIMNZ2M
Bio Rep 3, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFI3RTW5WQ
17.82m
6.32k
Experiment
4DNEX2XIVD4M
Bio Rep 4, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFIZHTSICG
16.05m
2.68k
Experiment
4DNEX68IX7HG
Bio Rep 5, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFIVVGRYRV
14.51m
4.51k
Experiment
4DNEX63QKCMT
Bio Rep 6, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFIVYQO6MW
16.94m
5.14k
Experiment
4DNEXE6VWXFX
Bio Rep 7, Tec Rep 1
RNA-seq on CH12
File
Gene Expression (tsv)
4DNFIKB34NHN
37.67m
37.44k