ExperimentSetReplicate

Browser Suggestion

Google Chrome  or Mozilla Firefox are the recommended browser(s) for using the 4DN Data Portal.

Microsoft Edge, Safari, Opera etc. should work for a majority of portal functions but are not explicitly supported and may present some glitches, e.g. during submission.

ExperimentSet4DNESZ79C7PK
released
View JSON

RNA-seq on wild-type WTC-11 iPSC cells differentiated for 12 days to ventricular cardiac myocytes.

   December 18th, 2024 at 7:45pm
Source Publication
Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor.
Grant ZL, Kuang S, et al., bioRxiv : the preprint server for biology 2025

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
in vitro differentiated cells
Sample 
WTC-11 differentiated to cardiac muscle cell
Experiment Type(s) 
RNA-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

    Explore Data

Loading
Experiment
File
File Type
File Size
Experiment
4DNEXJ6F26CT
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFIWKS1L2B
read positions (bam)
3.18 GB
File
4DNFIWF6L6G3
read counts (bw)
194.24 MB
File
4DNFICPO9QOM
gene expression (tsv)
10.56 MB
File
4DNFITFHNMAH
isoform expression (tsv)
30.04 MB
Experiment
4DNEX5WD22E7
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI1FQZ5XC
read positions (bam)
3.46 GB
File
4DNFIN7TYYPC
read counts (bw)
207.14 MB
File
4DNFI12O1S4F
gene expression (tsv)
10.55 MB
File
4DNFI3GSVFYX
isoform expression (tsv)
30.03 MB
Experiment
4DNEX9TGDWDF
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
4DNFI26844MU
read positions (bam)
3.1 GB
File
4DNFIJSB9NIU
read counts (bw)
202.42 MB
File
4DNFIVSG7IP8
gene expression (tsv)
10.55 MB
File
4DNFI6TLWHK1
isoform expression (tsv)
30.02 MB

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXJ6F26CT
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFIWKS1L2B
47m
41.61m
Experiment
4DNEX5WD22E7
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI1FQZ5XC
49.78m
43.58m
Experiment
4DNEX9TGDWDF
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Read Positions (bam)
4DNFI26844MU
45.45m
40.2m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXJ6F26CT
Bio Rep 1, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFICPO9QOM
16.68m
67
Experiment
4DNEX5WD22E7
Bio Rep 2, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFI12O1S4F
14.01m
64
Experiment
4DNEX9TGDWDF
Bio Rep 3, Tec Rep 1
RNA-seq on WTC-11 differentiated to cardiac muscle cell
File
Gene Expression (tsv)
4DNFIVSG7IP8
12.11m
171