ExperimentSetReplicate

ExperimentSet4DNESZ6ZTSNN
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RNA FISH of Prdx2 and Pabpc1 intronic regions in G1E-ER4 cells differentiated for 13 hours

   September 14th, 2018 at 4:59pm
Source Publication
Transcriptional Burst Initiation and Polymerase Pause Release Are Key Control Points of Transcriptional Regulation.
Bartman CR, Hamagami N, et al., Molecular cell 2018

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
stem cells
Sample 
G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
Experiment Type(s) 
RNA FISH
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Target: Chromosomes, GRCm38:8:84969622-84974811 mouse region, GRCm38:15:36595658-36608973 mouse region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCm38:8:84969622-84974811 mouse region targeted by Cy5-labeled custom oligos
ch02
GRCm38:15:36595658-36608973 mouse region targeted by Cy3-labeled custom oligos

12 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXANHF1Y4
Bio Rep 1, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFI2VPGWZF
csv
21.85 kB
File
4DNFIPWRP4BA
coordinates (csv)
5.24 kB
File
4DNFINPZUV3G
csv
25.6 kB
File
4DNFI1XO3RUJ
coordinates (csv)
6.44 kB
Experiment
4DNEXMH1D4XX
Bio Rep 2, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIVX9G9RH
csv
26.6 kB
File
4DNFIUCCL7KS
coordinates (csv)
6.82 kB
File
4DNFIUWLNC1E
csv
41.27 kB
File
4DNFID89NR57
coordinates (csv)
10.99 kB
Experiment
4DNEXN2G63HT
Bio Rep 3, Tec Rep 1
RNA FISH on G1E-ER4 with random integration of ER-responsive GATA-1, GATA-1 gene deletion
File
4DNFIY74A9ZY
csv
21.67 kB
File
4DNFIKGUVLYT
coordinates (csv)
5.92 kB
File
4DNFIERIYBB8
csv
31 kB
File
4DNFIACC6LVR
coordinates (csv)
7.93 kB