ExperimentSetReplicate

ExperimentSet4DNESZ3WOUGT
released
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RNA-Seq on TCF-1 KO Scid.adh cells

   October 18th, 2022 at 3:53pm
Source Publication
TCF-1 promotes chromatin interactions across topologically associating domains in T cell progenitors.
Wang W, Chandra A, et al., Nature immunology 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
immortalized cells
Sample 
scid.adh
Experiment Type(s) 
RNA-seq
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
None

10 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXM4RI9GF
Bio Rep 1, Tec Rep 1
RNA-seq on scid.adh
File
Read Positions (bam)
4DNFIRGQO8GM
10.01m
6.67m
Experiment
4DNEXHKNSGIU
Bio Rep 2, Tec Rep 1
RNA-seq on scid.adh
File
Read Positions (bam)
4DNFIZBOIPRM
10.88m
7.76m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXM4RI9GF
Bio Rep 1, Tec Rep 1
RNA-seq on scid.adh
File
Gene Expression (tsv)
4DNFIRPSSZFJ
3.95m
120.65k
Experiment
4DNEXHKNSGIU
Bio Rep 2, Tec Rep 1
RNA-seq on scid.adh
File
Gene Expression (tsv)
4DNFIWL9EGWN
4.21m
123.14k