ExperimentSetReplicate

ExperimentSet4DNESYO1PLH7
released
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ChIP-seq on epiblast stem cells (EPISC) from mouse ( control)

   December 4th, 2023 at 10:42pm
Source Publication
Systematic mapping and modeling of 3D enhancer-promoter interactions in early mouse embryonic lineages reveal regulatory principles that determine the levels and cell-type specificity of gene expression.
Murphy D, Salataj E, et al., bioRxiv : the preprint server for biology 2023

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
in vitro differentiated cells
Sample 
KH2 ESC differentiated to stem cell
Experiment Type(s) 
ChIP-seq
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: None (Control)

2 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXYLXSGOW
Bio Rep 1, Tec Rep 1
ChIP-seq on KH2 ESC differentiated to stem cell
File
4DNFIGARMC2F
read positions (bed)
161.15 MB
Experiment
4DNEXQ1NHP74
Bio Rep 2, Tec Rep 1
ChIP-seq on KH2 ESC differentiated to stem cell
File
4DNFIHKMC934
read positions (bed)
118.77 MB

Quality Metrics

Experiment
For File
PCR Bottleneck Coefficient (PBC)
Nonredundant Read Fraction (NRF)
Filtered & Deduped Reads
Report
Details
Experiment
4DNEXYLXSGOW
Bio Rep 1, Tec Rep 1
ChIP-seq on KH2 ESC differentiated to stem cell
File
Read Positions (bed)
4DNFIGARMC2F
0.85
0.84
24.5m
Experiment
4DNEXQ1NHP74
Bio Rep 2, Tec Rep 1
ChIP-seq on KH2 ESC differentiated to stem cell
File
Read Positions (bed)
4DNFIHKMC934
0.87
0.86
17.75m