ExperimentSetReplicate

ExperimentSet4DNESYNKYXQN
released
View JSON

Multiplexed FISH in lymphoblastoid cell line with homozygous (rs143348853) indel mutation in chr17 AXIN2 gene.

   July 8th, 2025 at 2:41pm
Source Publication
A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation.
Llimos G, Gardeux V, et al., Nature communications 2022

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
primary cells
Sample 
B-lymphocyte
Experiment Type(s) 
multiplexed FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: GRCh38:17:63486119-63686118 region
Channel
Path
 
ch00
200-kb at 8-kb resolution on chr 17 (AXIN2 VCM) targeted by oligo probe library (with Cy3-labeled fiducial oligo probes)
ch01
200-kb at 8-kb resolution on chr 17 (AXIN2 VCM) targeted by oligo probe library (with Cy5-labeled fiducial oligo probes)

6 Processed Files

Experiment
File
File Type
File Size
Experiment
4DNEXU2FYC2S
Bio Rep 1, Tec Rep 1
multiplexed FISH on B-lymphocyte
File
4DNFIG51R1QG
FOF-CT - DNA-spot/trace core (csv)
541.15 kB
File
4DNFI4KG7DLC
FOF-CT - spot quality (csv)
109.76 kB
File
4DNFIOBOBBAG
FOF-CT - trace data (csv)
10.64 kB
Experiment
4DNEX4L5AR91
Bio Rep 2, Tec Rep 1
multiplexed FISH on B-lymphocyte
File
4DNFIIHHT16W
FOF-CT - DNA-spot/trace core (csv)
2.32 MB
File
4DNFIMPZFPHR
FOF-CT - spot quality (csv)
490.06 kB
File
4DNFI4JXA2KC
FOF-CT - trace data (csv)
36.93 kB