ExperimentSetReplicate

ExperimentSet4DNESYN5S51A
released

RNA-seq on cerebellum from CD1 mouse postnatal day 10

   February 27th, 2024 at 5:32pm

Data Usage Guidelines  


Data Use Guidelines: This is a data set generated by the 4DN Network and made freely available to the scientific community. If you are intending to use these data for a publication, we ask that you please contact the data generating lab to discuss possible coordinated publication. In your manuscript, please cite the 4DN White Paper (doi:10.1038/nature23884) and the 4DN Data Portal paper (doi:10.1038/s41467-022-29697-4), and please acknowledge the 4DN lab which generated the data. Please direct any questions to the Data Coordination and Integration Center.


Experiment Set Properties  


Set Type 
Replicate
Organism 
Sample Type 
tissue
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
None

12 Processed Files

Quality Metrics

Experiment
For File
Total mapped reads (genome)
Total uniquely mapped reads (genome)
Details
Experiment
4DNEXICNPFL2
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellum - PND 10
File
Read Positions (bam)
4DNFIN44XBJ7
18.64m
16.29m
Experiment
4DNEXRZEWR7K
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellum - PND 10
File
Read Positions (bam)
4DNFII9U5T6I
15.33m
13.4m
Experiment
4DNEX7LGT1W9
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellum - PND 10
File
Read Positions (bam)
4DNFITSH5TOY
17.44m
15.25m
Experiment
For File
Reads mapped to protein-coding genes
Reads mapped to rRNA
Details
Experiment
4DNEXICNPFL2
Bio Rep 1, Tec Rep 1
RNA-seq on cerebellum - PND 10
File
Gene Expression (tsv)
4DNFISEYV6Q1
23.65m
10.13k
Experiment
4DNEXRZEWR7K
Bio Rep 2, Tec Rep 1
RNA-seq on cerebellum - PND 10
File
Gene Expression (tsv)
4DNFIVOCD998
19.15m
10.43k
Experiment
4DNEX7LGT1W9
Bio Rep 3, Tec Rep 1
RNA-seq on cerebellum - PND 10
File
Gene Expression (tsv)
4DNFI5REVI9K
22.27m
13k