ExperimentSetReplicate

ExperimentSet4DNESYL95PZT
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DNA Paint on HFF Htert cells with 3 loci

   August 17th, 2018 at 4:41pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:107482705-107645471 region, GRCh38:1:109469002-109662490 region, GRCh38:1:12708719-12865743 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:107482705-107645471 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:109469002-109662490 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:12708719-12865743 region targeted by Alexa Fluor 488-labeled BAC

13 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESYL95PZT
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEXYGA7GGB
Bio Rep 1, Tec Rep 7
DNA FISH on HFF-hTERT
File
4DNFIFD7T1D3
loci distances (txt)
76.34 kB
Experiment
4DNEXSPWN97Z
Bio Rep 1, Tec Rep 8
DNA FISH on HFF-hTERT
File
4DNFISPKVMRM
loci distances (txt)
50.75 kB
Experiment
4DNEXVGNA4E4
Bio Rep 1, Tec Rep 9
DNA FISH on HFF-hTERT
File
4DNFIXZMX3C6
loci distances (txt)
69.55 kB
Experiment
4DNEX11GMDK9
Bio Rep 1, Tec Rep 10
DNA FISH on HFF-hTERT
File
4DNFIDLKIZAL
loci distances (txt)
62.19 kB
Experiment
4DNEXLMHEJU2
Bio Rep 1, Tec Rep 11
DNA FISH on HFF-hTERT
File
4DNFI9V62YNL
loci distances (txt)
82.84 kB
Experiment
4DNEXOB33GR4
Bio Rep 1, Tec Rep 12
DNA FISH on HFF-hTERT
File
4DNFIG77WMC8
loci distances (txt)
53.61 kB
Experiment
4DNEXWVVQRAX
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFI4O6Y41S
loci distances (txt)
92.69 kB
Experiment
4DNEXE4H8DI8
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIGR99JYE
loci distances (txt)
95.32 kB
Experiment
4DNEXSOTV1YY
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIOVD6NOL
loci distances (txt)
115.69 kB
Experiment
4DNEXRXW7467
Bio Rep 1, Tec Rep 4
DNA FISH on HFF-hTERT
File
4DNFI745CSWV
loci distances (txt)
86.62 kB
Experiment
4DNEX4FACY52
Bio Rep 1, Tec Rep 5
DNA FISH on HFF-hTERT
File
4DNFIMO9HB14
loci distances (txt)
113.01 kB
Experiment
4DNEXYIS83RT
Bio Rep 1, Tec Rep 6
DNA FISH on HFF-hTERT
File
4DNFICT9II1W
loci distances (txt)
64.29 kB
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