ExperimentSetReplicate

ExperimentSet4DNESYK6LDN6
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 2 - Before prometaphase arrest (asynchronous control)

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESYK6LDN6
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI21UW2W3
41.33m
40.392%
22.267%
37.341%
Experiment
4DNEX7GLQH5A
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIULRWMQD
41.33m
40.392%
22.267%
37.341%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX7GLQH5A
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIG5QW7HN
81.97m
15.034%
23.92%
10.617%
0.008%
0.205%