ExperimentSetReplicate

ExperimentSet4DNESYJGWM4L
released
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in situ Hi-C on synchronyzed HeLa cells - Replicate 3 - 2.75 hours after release from prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication
A chromosome folding intermediate at the condensin-to-cohesin transition during telophase.
Abramo K, Valton AL, et al., Nature cell biology 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HeLa-S3
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESYJGWM4L
Multiple Experiments
File
Contact List-combined (pairs)
4DNFI51Z1NRK
54.69m
51.384%
14.087%
34.529%
Experiment
4DNEXLIVV6NM
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFI8U3M6B3
54.69m
51.384%
14.087%
34.529%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESYJGWM4L
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI65IM3YR
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXLIVV6NM
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFI8YFZ34P
106.76m
12.55%
23.92%
12.295%
0.005%
0.185%