ExperimentSetReplicate

ExperimentSet4DNESYFX9S6W
released
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DNA Paint on HFF Htert cells with 3 loci

   August 13th, 2018 at 4:06pm
Source Publication
Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization.
Finn EH, Pegoraro G, et al., Cell 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
immortalized cells
Sample 
HFF-hTERT
Experiment Type(s) 
DNA FISH
Modification Type 
None
Treatment Type 
None
Assay Details 
Target: Chromosomes, GRCh38:1:118815746-118989848 region, GRCh38:1:115549997-115729561 region, GRCh38:1:105256970-105427280 region
Channel
Path
 
ch00
Chromosomes targeted by DAPI
ch01
GRCh38:1:118815746-118989848 region targeted by Cy5-labeled BAC
ch02
GRCh38:1:115549997-115729561 region targeted by Alexa Fluor 568-labeled BAC
ch03
GRCh38:1:105256970-105427280 region targeted by Alexa Fluor 488-labeled BAC

7 Processed Files

Experiment
File
File Type
File Size
From Multiple Experiments
4DNESYFX9S6W
Multiple Experiments
File
4DNFID78GRES
locus distances, submitter format (txt)
26.34 kB
Experiment
4DNEX8N32L6I
Bio Rep 1, Tec Rep 4
DNA FISH on HFF-hTERT
File
4DNFI64FSGDM
loci distances (txt)
252.22 kB
Experiment
4DNEXS3545L1
Bio Rep 1, Tec Rep 5
DNA FISH on HFF-hTERT
File
4DNFIVHFQYNB
loci distances (txt)
246.28 kB
Experiment
4DNEXLTWMZYY
Bio Rep 1, Tec Rep 6
DNA FISH on HFF-hTERT
File
4DNFIMW8INBG
loci distances (txt)
238.49 kB
Experiment
4DNEXQJL51QS
Bio Rep 1, Tec Rep 1
DNA FISH on HFF-hTERT
File
4DNFIA7AEJKY
loci distances (txt)
212.35 kB
Experiment
4DNEXTT393NW
Bio Rep 1, Tec Rep 2
DNA FISH on HFF-hTERT
File
4DNFIM6UJIU8
loci distances (txt)
184.46 kB
Experiment
4DNEXV95D9GP
Bio Rep 1, Tec Rep 3
DNA FISH on HFF-hTERT
File
4DNFIJ77IL67
loci distances (txt)
181.37 kB