ExperimentSetReplicate

ExperimentSet4DNESYB59H2X
released

in situ Hi-C on synchronyzed HeLa cells - Replicate 2 - Prometaphase arrest

   August 16th, 2019 at 8:46pm
Source Publication

Assay Description  



Experiment Set Properties  


Set Type 
Replicate
Organism 
Biosource Type 
immortalized cell line
Biosource 
HeLa-S3
Experiment Type(s) 
Modification Type 
None
Treatment Type 
Chemical
Assay Details 
Enzyme: DpnII

6 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESYB59H2X
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIGANOIPS
51.5m
59.147%
21.894%
18.959%
Experiment
4DNEXABYDQ1R
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Contact List-replicate (pairs)
4DNFIKZY8Y2O
51.5m
59.147%
21.894%
18.959%
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXABYDQ1R
Bio Rep 1, Tec Rep 1
in situ Hi-C on HeLa-S3 with DpnII
File
Alignments (bam)
4DNFIKA8TP4Z
104.01m
15.139%
23.357%
11.976%
0.007%
0.163%