ExperimentSetReplicate

ExperimentSet4DNESY8KOX6F
released
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Hi-C on GFP+ Foxp3 KIKO Treg cells isolated from thymus

   May 2nd, 2023 at 9:14pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
"wannabe" Treg - thymus - Foxp3-KO
Experiment Type(s) 
in situ Hi-C
Modification Type 
Crispr
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESY8KOX6F
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIA3WVQEK
208.69m
58.272%
16.639%
25.089%
Experiment
4DNEX15GJ6S6
Bio Rep 1, Tec Rep 1
in situ Hi-C on "wannabe" Treg - thymus - Foxp3-KO with MboI
File
Contact List-replicate (pairs)
4DNFI1N7XCC8
107.34m
58.464%
16.42%
25.116%
Experiment
4DNEX8NEO918
Bio Rep 2, Tec Rep 1
in situ Hi-C on "wannabe" Treg - thymus - Foxp3-KO with MboI
File
Contact List-replicate (pairs)
4DNFIFQQRJBG
101.35m
58.07%
16.87%
25.061%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESY8KOX6F
Multiple Experiments
File
Contact Matrix (mcool)
4DNFIWZM369J
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEX15GJ6S6
Bio Rep 1, Tec Rep 1
in situ Hi-C on "wannabe" Treg - thymus - Foxp3-KO with MboI
File
Alignments (bam)
4DNFI57G3J1H
177.7m
4.866%
10.624%
15.181%
8.926%
0.125%
Experiment
4DNEX8NEO918
Bio Rep 2, Tec Rep 1
in situ Hi-C on "wannabe" Treg - thymus - Foxp3-KO with MboI
File
Alignments (bam)
4DNFI85DVE5F
165.75m
4.985%
10.574%
14.324%
8.968%
0.125%