ExperimentSetReplicate

ExperimentSet4DNESY7VL8D4
released
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Hi-C on CD8+ CD4+ double positive T cells isolated from thymus

   May 2nd, 2023 at 9:14pm
Source Publication
Foxp3 orchestrates reorganization of chromatin architecture to establish regulatory T cell identity.
Liu Z, Lee DS, et al., Nature communications 2023

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
M. musculus
Sample Type 
primary cells
Sample 
double-positive, alpha-beta thymocyte
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: MboI

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESY7VL8D4
Multiple Experiments
File
Contact List-combined (pairs)
4DNFIVEN1C4B
123.13m
58.096%
14.459%
27.445%
Experiment
4DNEXYYZ7SJT
Bio Rep 1, Tec Rep 1
in situ Hi-C on double-positive, alpha-beta thymocyte with MboI
File
Contact List-replicate (pairs)
4DNFICJO26VJ
19.2m
58.387%
15.335%
26.278%
Experiment
4DNEXRCSUQS2
Bio Rep 2, Tec Rep 1
in situ Hi-C on double-positive, alpha-beta thymocyte with MboI
File
Contact List-replicate (pairs)
4DNFIXKT2O9X
103.93m
58.042%
14.298%
27.661%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESY7VL8D4
Multiple Experiments
File
Contact Matrix (mcool)
4DNFISKMEEVJ
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXYYZ7SJT
Bio Rep 1, Tec Rep 1
in situ Hi-C on double-positive, alpha-beta thymocyte with MboI
File
Alignments (bam)
4DNFIV13F7RC
29.52m
5.129%
11.202%
9.06%
9.57%
0.128%
Experiment
4DNEXRCSUQS2
Bio Rep 2, Tec Rep 1
in situ Hi-C on double-positive, alpha-beta thymocyte with MboI
File
Alignments (bam)
4DNFI1ISG9WL
178.85m
6.128%
11.161%
14.835%
9.765%
0.12%