ExperimentSetReplicate

ExperimentSet4DNESY4QMHAD
released
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in situ Hi-C on primary cardiomyocytes from the left atrium - donor 01160

   April 20th, 2023 at 9:45am
Source Publication
Detailed Regulatory Interaction Map of the Human Heart Facilitates Gene Discovery for Cardiovascular Disease
Bianchi V, Geeven G, et al., bioRxiv 2019

Assay Description  

Experiment Set Properties  

Set Type 
Replicate
Organism 
H. sapiens
Sample Type 
tissue
Sample 
heart left atrium
Experiment Type(s) 
in situ Hi-C
Modification Type 
None
Treatment Type 
None
Assay Details 
Enzyme: DpnII

10 Processed Files

Quality Metrics

Experiment
For File
Filtered Reads
Cis reads (>20kb)
Short cis reads
Trans Reads
Report
Details
From Multiple Experiments
4DNESY4QMHAD
Multiple Experiments
File
Contact List-combined (pairs)
4DNFISL1D7WI
619.54m
42.632%
24.165%
33.204%
Experiment
4DNEXJSLLABE
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Contact List-replicate (pairs)
4DNFIIR3OYM2
402.81m
42.941%
24.824%
32.235%
Experiment
4DNEXOZ81UPB
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Contact List-replicate (pairs)
4DNFILFUD5QU
216.73m
42.058%
22.939%
35.003%
Experiment
For File
Failed Balancing
Details
From Multiple Experiments
4DNESY4QMHAD
Multiple Experiments
File
Contact Matrix (mcool)
4DNFI19PH2JA
None
Experiment
For File
Total Reads
Unmapped Reads
Multimapped Reads
Duplicate Reads
Walks
Minor Contigs
Details
Experiment
4DNEXJSLLABE
Bio Rep 1, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Alignments (bam)
4DNFI3E4WXSP
733.9m
12.187%
18.8%
8.518%
5.609%
0.243%
Experiment
4DNEXOZ81UPB
Bio Rep 2, Tec Rep 1
in situ Hi-C on heart left atrium with DpnII
File
Alignments (bam)
4DNFIOKY8LWP
364.87m
11.61%
15.787%
5.114%
8.09%
0.303%